Gene detail information of Glyur000488s00030331.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58140.1 | 5.00E-08 | phenylalanyl-tRNA synthetase class IIc family protein |
| NR | KEH23469.1 | 1.63E-09 | phenylalanyl-tRNA synthetase [Medicago truncatula] |
| Swissprot | tr|Q94K73|SYFM_ARATH | 4.00E-09 | Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|A0A072U182|A0A072U182_MEDTR | 6.00E-10 | Phenylalanyl-tRNA synthetase {ECO:0000313|EMBL:KEH23469.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00488 | 31279 | 41000 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01889 | FARSA, pheS | EC:6.1.1.20 | Aminoacyl-tRNA biosynthesis | map00970 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.022 |
| SRR1783602 | moderate drought stress | 0.176 |
| SRR1811619 | moderate drought stress | 0.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.482 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.998 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.693 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.522 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.569 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.648 |
| SRR2967015 | Control (Tissue:root) | 0.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.251 |
| SRR9715740 | Leave | 0.517 |
| SRR9715741 | Leave | 2.845 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.228 |
| SRR9715743 | Root | 0.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.590 |
| SRR8749028 | MeJA induced 9h | 3.626 |
| SRR8749029 | MeJA induced 9h | 1.413 |
| SRR8749030 | Uninduced | 4.673 |
| SRR8749031 | Uninduced | 3.516 |
| SRR8749032 | Uninduced | 1.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.894 |
| SRR8400027 | Control-Root | 0.617 |