Gene detail information of Glyur000489s00017474.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19380.1 | 2.00E-38 | plant U-box 25 |
| NR | XP_003526867.1 | 0 | PREDICTED: U-box domain-containing protein 25-like isoform X1 [Glycine max] |
| COG | YP_001957951.1 | 1.00E-10 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9LT79|PUB25_ARATH | 4.00E-46 | U-box domain-containing protein 25 |
| trEMBL | tr|I1KBK0|I1KBK0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G15960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00489 | 4564 | 5781 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000489s00017474.1 | PF04564.10 | U-box | 10 | 78 | 1.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.542 |
| SRR1783600 | control | 1.561 |
| SRR1783602 | moderate drought stress | 1.776 |
| SRR1811619 | moderate drought stress | 1.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.014 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.176 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.312 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.676 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.488 |
| SRR2967015 | Control (Tissue:root) | 6.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.377 |
| SRR9715740 | Leave | 0.070 |
| SRR9715741 | Leave | 0.097 |
| SRR9715739 | Root | 0.827 |
| SRR9715742 | Root | 0.596 |
| SRR9715743 | Root | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.149 |
| SRR8749028 | MeJA induced 9h | 34.032 |
| SRR8749029 | MeJA induced 9h | 9.871 |
| SRR8749030 | Uninduced | 17.048 |
| SRR8749031 | Uninduced | 5.538 |
| SRR8749032 | Uninduced | 5.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.302 |
| SRR8400027 | Control-Root | 6.216 |