Gene detail information of Glyur000489s00017476.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09300.1 | 0 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein |
| NR | XP_003602628.1 | 0 | 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] |
| COG | YP_434851.1 | 1.00E-127 | 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit alpha [Hahella chejuensis KCTC 2396] |
| Swissprot | tr|Q84JL2|ODBA2_ARATH | 0 | 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor) |
| trEMBL | tr|G7JBL9|G7JBL9_MEDTR | 0 | 2-oxoisovalerate dehydrogenase E1 component, alpha subunit {ECO:0000313|EMBL:AES72879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00489 | 17480 | 22997 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00166 | BCKDHA, bkdA1 | EC:1.2.4.4 | Propanoate metabolism | map00640 |
| Valine, leucine and isoleucine degradation | map00280 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000489s00017476.1 | PF00676.15 | E1_dh | 120 | 415 | 4.00E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.658 |
| SRR1783600 | control | 3.319 |
| SRR1783602 | moderate drought stress | 3.462 |
| SRR1811619 | moderate drought stress | 3.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.003 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.532 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.693 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.446 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.532 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.166 |
| SRR2967015 | Control (Tissue:root) | 8.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.139 |
| SRR9715740 | Leave | 6.939 |
| SRR9715741 | Leave | 8.722 |
| SRR9715739 | Root | 0.626 |
| SRR9715742 | Root | 1.532 |
| SRR9715743 | Root | 1.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.681 |
| SRR8749028 | MeJA induced 9h | 6.944 |
| SRR8749029 | MeJA induced 9h | 3.851 |
| SRR8749030 | Uninduced | 7.966 |
| SRR8749031 | Uninduced | 8.181 |
| SRR8749032 | Uninduced | 6.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.452 |
| SRR8400027 | Control-Root | 6.108 |