Gene detail information of Glyur000489s00017476.3 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G09300.1 | 0 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein |
NR | XP_003602628.1 | 0 | 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] |
COG | YP_434851.1 | 1.00E-127 | 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit alpha [Hahella chejuensis KCTC 2396] |
Swissprot | tr|Q84JL2|ODBA2_ARATH | 0 | 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor) |
trEMBL | tr|G7JBL9|G7JBL9_MEDTR | 0 | 2-oxoisovalerate dehydrogenase E1 component, alpha subunit {ECO:0000313|EMBL:AES72879.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00489 | 17480 | 22997 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00166 | BCKDHA, bkdA1 | EC:1.2.4.4 | Propanoate metabolism | map00640 |
Valine, leucine and isoleucine degradation | map00280 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000489s00017476.3 | PF00676.15 | E1_dh | 29 | 105 | 2.10E-16 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 3.658 |
SRR1783600 | control | 3.319 |
SRR1783602 | moderate drought stress | 3.462 |
SRR1811619 | moderate drought stress | 3.417 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 4.254 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 4.003 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 3.532 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 3.291 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 4.693 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 4.446 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.611 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.491 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 5.532 |
SRR2868004 | Drought Stress(Tissue:root) | 7.166 |
SRR2967015 | Control (Tissue:root) | 8.388 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 9.139 |
SRR9715740 | Leave | 6.939 |
SRR9715741 | Leave | 8.722 |
SRR9715739 | Root | 0.626 |
SRR9715742 | Root | 1.532 |
SRR9715743 | Root | 1.554 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 5.681 |
SRR8749028 | MeJA induced 9h | 6.944 |
SRR8749029 | MeJA induced 9h | 3.851 |
SRR8749030 | Uninduced | 7.966 |
SRR8749031 | Uninduced | 8.181 |
SRR8749032 | Uninduced | 6.933 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 6.452 |
SRR8400027 | Control-Root | 6.108 |