Gene detail information of Glyur000489s00017493.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63970.23.00E-157Copine (Calcium-dependent phospholipid-binding protein) family
NRKEH35605.10E3 ubiquitin-protein ligase RGLG2-like protein [Medicago truncatula]
Swissprottr|Q9SS90|RGLG1_ARATH7.00E-164E3 ubiquitin-protein ligase RGLG1
trEMBLtr|A0A072VBP5|A0A072VBP5_MEDTR0E3 ubiquitin-protein ligase RGLG2-like protein {ECO:0000313|EMBL:KEH35605.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004897823783305+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000489s00017493.1PF07002.11Copine1332813.70E-51
Glyur000489s00017493.1PF13920.1zf-C3HC4_33954344.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control36.523
SRR1783600control36.786
SRR1783602moderate drought stress27.958
SRR1811619moderate drought stress27.725

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.494
DRR006520Root Summer glycyrrhizin high producing strain31.912
DRR006521Root Winter glycyrrhizin high producing strain47.894
DRR006522Root Winter glycyrrhizin high producing strain46.957
DRR006523Root Summer glycyrrhizin low producing strain74.102
DRR006524Root Summer glycyrrhizin low producing strain74.466
DRR006525Leaf Summer glycyrrhizin high producing strain9.224
DRR006526Leaf Summer glycyrrhizin high producing strain9.328

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.903
SRR2868004Drought Stress(Tissue:root)45.561
SRR2967015Control (Tissue:root)34.630

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.105
SRR9715740Leave17.258
SRR9715741Leave28.950
SRR9715739Root8.427
SRR9715742Root29.704
SRR9715743Root24.446

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.821
SRR8749028MeJA induced 9h48.204
SRR8749029MeJA induced 9h44.156
SRR8749030Uninduced95.143
SRR8749031Uninduced83.260
SRR8749032Uninduced52.863

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.284
SRR8400027Control-Root26.151

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved