Gene detail information of Glyur000489s00017494.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63960.10DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases
NRXP_004502958.10PREDICTED: DNA polymerase delta catalytic subunit-like [Cicer arietinum]
COGYP_007312033.11.00E-125DNA polymerase elongation subunit (family B) [Methanomethylovorans hollandica DSM 15978]
Swissprottr|Q9LRE6|DPOD1_ORYSJ0DNA polymerase delta catalytic subunit
trEMBLtr|I1KBL4|I1KBL4_SOYBN0DNA polymerase {ECO:0000256|RuleBase:RU000442}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004898392197079-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02327POLD1 EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
HTLV-I infectionmap05166


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008408  3'-5' exonuclease activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000489s00017494.1PF03104.14DNA_pol_B_exo11174604.60E-87
Glyur000489s00017494.1PF00136.16DNA_pol_B5339645.50E-147
Glyur000489s00017494.1PF14260.1zf-C4pol99410666.40E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.879
SRR1783600control5.838
SRR1783602moderate drought stress4.816
SRR1811619moderate drought stress4.745

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.490
DRR006520Root Summer glycyrrhizin high producing strain6.458
DRR006521Root Winter glycyrrhizin high producing strain4.666
DRR006522Root Winter glycyrrhizin high producing strain4.453
DRR006523Root Summer glycyrrhizin low producing strain6.019
DRR006524Root Summer glycyrrhizin low producing strain6.131
DRR006525Leaf Summer glycyrrhizin high producing strain2.462
DRR006526Leaf Summer glycyrrhizin high producing strain2.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.333
SRR2868004Drought Stress(Tissue:root)8.500
SRR2967015Control (Tissue:root)7.888

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.554
SRR9715740Leave2.927
SRR9715741Leave2.308
SRR9715739Root1.347
SRR9715742Root4.903
SRR9715743Root3.411

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.334
SRR8749028MeJA induced 9h9.537
SRR8749029MeJA induced 9h4.580
SRR8749030Uninduced1.806
SRR8749031Uninduced0.809
SRR8749032Uninduced0.827

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.893
SRR8400027Control-Root10.719

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved