Gene detail information of Glyur000489s00017498.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63920.10topoisomerase 3alpha
NRXP_004502963.10PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
COGYP_003542001.14.00E-80DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Swissprottr|C7J0A2|TOP3A_ORYSJ0DNA topoisomerase 3-alpha
trEMBLtr|V7AVV0|V7AVV0_PHAVU0DNA topoisomerase {ECO:0000256|RuleBase:RU000518}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00489120079134015-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03165TOP3 EC:5.99.1.2 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006265  DNA topological change


cellular_component

GO:0005694  chromosome


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003916  DNA topoisomerase activity

GO:0003917  DNA topoisomerase type I activity

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000489s00017498.2PF01131.15Topoisom_bac1691.30E-09
Glyur000489s00017498.2PF01396.14zf-C4_Topoisom1171547.70E-08
Glyur000489s00017498.2PF00098.18zf-CCHC2422580.0002
Glyur000489s00017498.2PF06839.7zf-GRF2803209.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.522
SRR1783600control9.476
SRR1783602moderate drought stress9.560
SRR1811619moderate drought stress9.491

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.939
DRR006520Root Summer glycyrrhizin high producing strain8.305
DRR006521Root Winter glycyrrhizin high producing strain8.362
DRR006522Root Winter glycyrrhizin high producing strain6.996
DRR006523Root Summer glycyrrhizin low producing strain5.023
DRR006524Root Summer glycyrrhizin low producing strain4.600
DRR006525Leaf Summer glycyrrhizin high producing strain3.099
DRR006526Leaf Summer glycyrrhizin high producing strain3.138

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.095
SRR2868004Drought Stress(Tissue:root)13.306
SRR2967015Control (Tissue:root)15.194

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.771
SRR9715740Leave3.221
SRR9715741Leave3.584
SRR9715739Root3.470
SRR9715742Root7.032
SRR9715743Root6.437

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.235
SRR8749028MeJA induced 9h7.644
SRR8749029MeJA induced 9h3.814
SRR8749030Uninduced2.988
SRR8749031Uninduced1.771
SRR8749032Uninduced2.295

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.539
SRR8400027Control-Root17.070

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved