Gene detail information of Glyur000490s00023904.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G30890.36.00E-146ubiquitin-specific protease 24
NRXP_003595735.10Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]
Swissprottr|Q9FPS3|UBP24_ARATH1.00E-180Ubiquitin carboxyl-terminal hydrolase 24
trEMBLtr|G7IGQ8|G7IGQ8_MEDTR0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004902469130900+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11841USP10, UBP3 EC:3.4.19.12 Mitophagy - yeast map04139


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000490s00023904.1PF00443.24UCH1835629.00E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.122
SRR1783600control29.122
SRR1783602moderate drought stress38.763
SRR1811619moderate drought stress39.176

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.987
DRR006520Root Summer glycyrrhizin high producing strain34.725
DRR006521Root Winter glycyrrhizin high producing strain43.752
DRR006522Root Winter glycyrrhizin high producing strain43.036
DRR006523Root Summer glycyrrhizin low producing strain38.228
DRR006524Root Summer glycyrrhizin low producing strain38.541
DRR006525Leaf Summer glycyrrhizin high producing strain12.840
DRR006526Leaf Summer glycyrrhizin high producing strain13.339

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.286
SRR2868004Drought Stress(Tissue:root)32.556
SRR2967015Control (Tissue:root)26.585

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.088
SRR9715740Leave25.835
SRR9715741Leave18.302
SRR9715739Root4.970
SRR9715742Root16.788
SRR9715743Root14.443

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.940
SRR8749028MeJA induced 9h31.155
SRR8749029MeJA induced 9h25.110
SRR8749030Uninduced28.293
SRR8749031Uninduced34.658
SRR8749032Uninduced28.581

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.995
SRR8400027Control-Root30.581

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved