Gene detail

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Gene detail information of Glyur000490s00023914.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66460.1	8.00E-97	Glycosyl hydrolase superfamily protein
NR	XP_003605853.1	5.47E-173	Mannan endo-1,4-beta-mannosidase [Medicago truncatula]
COG	YP_003324408.1	2.00E-52	glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q6YM50\|MAN5_SOLLC	6.00E-146	Mannan endo-1,4-beta-mannosidase 5 (Precursor)
trEMBL	tr\|G7JVU5\|G7JVU5_MEDTR	2.00E-173	Mannan endo-1,4-beta-mannosidase-like protein {ECO:0000313\|EMBL:AES88050.1}

Sequence

Transcript Sequence

>Glyur000490s00023914.1
ATGACTTCCATTAATATTAGGAACCTTATTATTATCACTAGTGCTATTATGGCACTTTTCATTTTGGCACCACTAGTTTGTGAAGGTAGATTTCTCCGTGTTACACCTGGATTTGTTCAAACCAAGGGAACGGAATTTGAGCTAAATGGCTCTCCGTTTTTGTTCAATGGCTTCAACTCTTATTGGATGATGAACGTAGCTGCTGATCCAAACCAAAGGTATAAAGTGTCCAATGTGTTTCGTGAGGCTTCAGCTGCGGGTCTCACTGTGTGTCGTACGTGGGCATTTAGTGATGGTGGCAACAATGCTCTACAAATATCCCCTGGTGTCTACAATGAGCCTGTGTTTCAGGCATTGGACTTCGTGATAGGCGAAGCGAAAAAGTATGGANTGCGTTTGATATTGAGTTTGGTCAACAATTACAACGATTTTGGAGGAAGACCTCAGTATGTGGAGTGGGCTAAGAGTCGTGGGGTTCCCGTCAATGACGATGACGACTTCTATACAAATCCTGTTATAAAGGGTTACTACAAAGCCCATGTCAAAAGTGTGCTGACAAGGATCAACACAATCACGAAAATCGCTTATAGAGATGAACCAACCATCATGGCTTGGGAACTAATCAATGAACCGCGCTGCCAAGTTGATTACTCTGGCAAGACCATAAACGCATGGGTTCAGGAGATGGCTCCATATCTGAAATCTATTGACAAAAAACACTTGTTGGAGGTTGGCATGGAAGGTTTCTACGGAGACTCCATCCCAGNTAGGAAACAATACAACCCTGGTTTCCAAAAGCCATTGGTGTTTACCGAATTCGGGATGTCGAAGAAGGATCCCGGGTATAGTATTGGTTCAAGGGATTCATTCATGAGTGTTGTGTATTCAAGCATCTATGGTTTGGCACAAAATGGAGGGGCATTTGCTGGGGGATTGGTTTGGCAACTATTGGATGAAGGAATGGATGCATATGATGATGGGTATGAGATTGTTCTATCTCAAAAACCCTTCTACATC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00490	107903	115351	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K19355	MAN	EC:3.2.1.78	Fructose and mannose metabolism	map00051

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000490s00023914.1	PF00150.13	Cellulase	48	269	1.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.494
SRR2868004	Drought Stress(Tissue:root)	0.708
SRR2967015	Control (Tissue:root)	0.371

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.126
SRR8749030	Uninduced	0.224
SRR8749031	Uninduced	0.760
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.059
SRR8400027	Control-Root	0.047