Gene detail information of Glyur000491s00023692.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49950.3 | 2.00E-62 | telomere repeat binding factor 1 |
| NR | XP_003517350.1 | 3.23E-145 | PREDICTED: telomere repeat-binding factor 2 [Glycine max] |
| Swissprot | tr|Q9FJW5|TRB2_ARATH | 4.00E-79 | Telomere repeat-binding factor 2 |
| trEMBL | tr|I1J9F3|I1J9F3_SOYBN | 1.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00491 | 4984 | 9599 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000491s00023692.1 | PF00249.26 | Myb_DNA-binding | 5 | 55 | 4.20E-09 |
| Glyur000491s00023692.1 | PF00538.14 | Linker_histone | 123 | 178 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.831 |
| SRR1783600 | control | 11.830 |
| SRR1783602 | moderate drought stress | 14.624 |
| SRR1811619 | moderate drought stress | 14.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.338 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.711 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.750 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.823 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.879 |
| SRR2967015 | Control (Tissue:root) | 15.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.927 |
| SRR9715740 | Leave | 10.596 |
| SRR9715741 | Leave | 9.151 |
| SRR9715739 | Root | 2.370 |
| SRR9715742 | Root | 5.416 |
| SRR9715743 | Root | 4.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.163 |
| SRR8749028 | MeJA induced 9h | 12.801 |
| SRR8749029 | MeJA induced 9h | 8.972 |
| SRR8749030 | Uninduced | 14.195 |
| SRR8749031 | Uninduced | 16.517 |
| SRR8749032 | Uninduced | 13.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.304 |
| SRR8400027 | Control-Root | 17.258 |