Gene detail information of Glyur000491s00023704.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49810.1 | 0 | ARM repeat superfamily protein |
| NR | AES94509.2 | 0 | E3 ubiquitin ligase PUB14 [Medicago truncatula] |
| COG | YP_001958455.1 | 3.00E-09 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q058P4|PUB30_ARATH | 0 | U-box domain-containing protein 30 |
| trEMBL | tr|G7K2F8|G7K2F8_MEDTR | 0 | E3 ubiquitin ligase PUB14 {ECO:0000313|EMBL:AES94509.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00491 | 101317 | 102660 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000491s00023704.1 | PF04564.10 | U-box | 63 | 133 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.957 |
| SRR1783600 | control | 8.039 |
| SRR1783602 | moderate drought stress | 8.244 |
| SRR1811619 | moderate drought stress | 8.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.951 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.444 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.504 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.092 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.361 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.530 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.990 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.128 |
| SRR2967015 | Control (Tissue:root) | 27.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.489 |
| SRR9715740 | Leave | 8.665 |
| SRR9715741 | Leave | 7.119 |
| SRR9715739 | Root | 33.384 |
| SRR9715742 | Root | 16.166 |
| SRR9715743 | Root | 18.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.772 |
| SRR8749028 | MeJA induced 9h | 11.596 |
| SRR8749029 | MeJA induced 9h | 8.981 |
| SRR8749030 | Uninduced | 3.681 |
| SRR8749031 | Uninduced | 0.611 |
| SRR8749032 | Uninduced | 0.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.152 |
| SRR8400027 | Control-Root | 19.586 |