Gene detail

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Gene detail information of Glyur000492s00023504.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49950.1	2.00E-134	GRAS family transcription factor
NR	XP_004509074.1	0	PREDICTED: scarecrow-like protein 32-like [Cicer arietinum]
Swissprot	tr\|Q9SN22\|SCL32_ARATH	1.00E-170	Scarecrow-like protein 32
trEMBL	tr\|I1K2B9\|I1K2B9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G22140.1}

Sequence

Transcript Sequence

>Glyur000492s00023504.1
ATGAACAACAAAAACAACCAACAAAATATTCCTAGGAGTAGTACCACTGCTAGGCCTCCATGGCCAGTATCATCAGGGTTCCCCACATCCAAAACCACCCTAGGTACTACTACTACTAGCAGCAGCTTTGCAGGCGACGCCAACTGCATGGAACAGTTACTCATTCACTGTGCCAACGCCATAGAGAGCAACGATGTAACCCTCGCCCAACAGATCCTCTGGGTCCTCAACAACATAGCACCCCCTGACGGTGACTCCAACCAACGCCTTGCCTGTAGCTTCCTTAAAGCCCTCACCGCCCGTGCTGCCAAAACCGGAACTTGCTACAAGATGCTTCTAGAAGATGATGCTCCTAACAACANCACCACCACCACCATATTACACACCCACAGATTCTCAGTCATCGAGCTAGCCAACTTTGTTGACTTGACACCGTGGCACCGCTTCGGTTTCACAGCGGCTAATGCAGCCATTCTTGAAGCCACGGAAGGGTTCTCGGTGATTCACATAGTGGACTTAAGCCTAACACATTGCATGCAGATTCCTACACTAATCGACGCCATCGCTAGCCGCCACAACCACCACAACGACGTCGTTTCGACTACTACTCCTCCTCCTCCTCTAATCAAGCTCACCGTAGCCGATGCTGCTAATTACACGGAATTAGTTTCACTCCCACTCCCACCCATGCTTGACCTTTCCTACGAGGAGTTGGGTTGTAAGTTGGTTAATTTCGCAAGATCGAGAAACGTTGCCATGGAATTCAGAGTGGTNCCTTCCAGTTACACAAACGGTTTCGCTTCTCTGATTGAACACCTCAGAGTGCAACGGTTAGTTTGCGCCGCGGAAGCCTTGGTCATAAACTGTCACATGATGCTTCATTACATCCCTGACGAAACCCTATTATCTGCAATTCCCGACACGGACTCAATCTTTGATTGTAATTATTCTACTAGCGCAACGGCGTCGTCGTTGCGAGCGTTGTTCCTTAAGGCGGTGAGGGGTTTAGACCCAACGCTTGTCGTTTTGGTGGATGAAGATGCGGATTTAACATCAAACGACTTGGTTTGCAGGCTGAGGTCTGCGTTTAACTATCTTTGGATACCTTACGACACGGTGGACACGTTCCTGCCGCGTGGGAGTAAGCAGAGGCAGTGGTATGAAGCGGACATTTGCTGGAAGATTGAGAATGTGATAGCGCATGAAGGGGTTCAGAGGGTGGAGCGGCTTGAGAGTATGGGAAAGTGGGAGCATCGAATGAGGATTGCGGGGTTTCAAGGGGTTGGGTTCAGTGAGGAGTCTGTTGCGGAGGTGAAGGGTATGCTGGATGAACATGCTGCTGGGTGGGGTTTGAAGAAGGAAGATGAAAACATTGTGCTTACATGGAAAGGCCACAATGTAGTCTTTGCCTCTGCTTGGTTGCCTGCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00492	17211	18641	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000492s00023504.1	PF03514.9	GRAS	51	473	3.20E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.227
SRR1783600	control	0.150
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	2.403
DRR006522	Root Winter glycyrrhizin high producing strain	2.397
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.272
SRR2868004	Drought Stress(Tissue:root)	8.573
SRR2967015	Control (Tissue:root)	6.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.093
SRR9715740	Leave	0.000
SRR9715741	Leave	0.239
SRR9715739	Root	0.134
SRR9715742	Root	0.059
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.426
SRR8749028	MeJA induced 9h	0.331
SRR8749029	MeJA induced 9h	0.639
SRR8749030	Uninduced	0.178
SRR8749031	Uninduced	0.077
SRR8749032	Uninduced	0.481

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.637
SRR8400027	Control-Root	0.350