Gene detail

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Gene detail information of Glyur000492s00023508.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49940.1	8.00E-65	LOB domain-containing protein 38
NR	ABG90382.1	5.87E-137	lateral organ boundaries domain protein [Caragana korshinskii]
Swissprot	tr\|Q9SN23\|LBD38_ARATH	1.00E-83	LOB domain-containing protein 38
trEMBL	tr\|Q0PN09\|Q0PN09_9FABA	2.00E-137	Lateral organ boundaries domain protein {ECO:0000313\|EMBL:ABG90382.1}

Sequence

Transcript Sequence

>Glyur000492s00023508.1
CTCAATTTGCATTCTCTCATCCTATCCCCCTCTCTTCCTCACACACACTCTCTCTATCTCTCTTCTCTAGCCAAATTCTTTTCATCATTATTCCTTGCAGGAAAGGAATAAAAAACCACCCTGGTCCCGCTTCTCTGTTTCTTCTCTTCCCAATAGTATTTGTTTTCATGTGAGGGCGATTTGGCAACAGTGTGTTTAATTTATACGAGCATAGTCACTCGCTGGGTTAATTAAATTTAATTTAATTAGAGGCATGAGTTGCAACGGGTGCCGAGTTCTTCGAAAGGGTTGCAGCGAGTCATGTGTTTTGCGCCCTTGTTTGCANTGGATCGAAAGCCCAGAAGCCCAAGGCCACGCCACCGTTTTCGTTGCCAAATTCTTTGGTCGCGCTGGCCTCATGTCCTTCATTTCCAACGTCCCTGAAACCCAAAGACCAGCTCTGTTTCAGTCTCTGCTGTTCGAAGCGTGCGGAAGAACGGTGAACCCTGTGAACGGNGCCGTCGGGCTTCTGTGGACCGGAAACTGGCACGTGTGCCAGGCAGCGGTGGAGACGGTCCTCCGCGGCGGCACGCTCAGGCCCTTGCCGGAGCTTACCGGCCTCCACTCGCCTCTTCCCGCCGCCGCCGACGAGGCGTCGGAGGCGGAAGTCACCTGCACGGACATTTGGAGGATCCGGGCTCCGAACCCGAATTGCCGGCTCACGAACTCGCGATCTAATAATAACAAGGCCTCTTCCTCCGGCGGCAAGCGCAGGCGATCGGAGGATCTCTCGAAGCTCCCGTCGGCGACCAATCTCGATCTCCGACTNACGCCGATTTTCCTGCAGAAAGGTTCGGAGACTCGCCGGCCGGGATCGCCGTCGATGACCTCGGAGGAATCCGTCACGACGACGGCGTGCTTGGAGACCGGGCTCGGAGATCGGTGGTCTCACGGCGGAGACCGGAAAGTTCTCAACCTTTTCATTTGAGGACTCTCTNTGTGACTCTGATTTGTGTGCGTGTGTGTGTGAGGTTAATGTTTTTGTGAATCGTCACGCGCGCGTAGTCTCTTATATGTTGTAACATTCCTCTATTTTGTTTACTCATTGTGGGGAAGAGCGACACACCGTTGTTCCCGGTTTTGTAGTTCGGCGAGTTCTTGTGAGATACCGGCACTGGATTTCTCCAGAGAGAAAGATGATGGTTCGTCGGTGATCCTTCGTTCATTTTTTTCGTTTTGTTTTGTTTCCTTTTTTACCCTGTCAAATATGAGACATCAGACATGTAAACCTGTGTCCGTGGGACATGAAATATTAATTAAATAAAAATAATAATGATTAGATATTTCTTTTGTTTTTCATCCTTTTTTTCACTTTTGCCAAAACATTTATGATTCATGAACCTTGAGTTGGATCAACATTTAGTTGTTTTCAGTGGGTCTGAACAAAGAAATCCTTCCTTGCTTGTATAAAAAAAAAAATAGAAATC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00492	38807	40390	-

Gene family

Gene family	subfamily
Transcription Factors Family	LOB
EAR motif-containing Proteins	LOB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000492s00023508.1	PF03195.9	DUF260	2	103	4.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.308
SRR1783600	control	98.092
SRR1783602	moderate drought stress	119.546
SRR1811619	moderate drought stress	118.926

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	83.438
DRR006520	Root Summer glycyrrhizin high producing strain	82.778
DRR006521	Root Winter glycyrrhizin high producing strain	6.198
DRR006522	Root Winter glycyrrhizin high producing strain	5.706
DRR006523	Root Summer glycyrrhizin low producing strain	73.504
DRR006524	Root Summer glycyrrhizin low producing strain	71.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.024

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	87.798
SRR2868004	Drought Stress(Tissue:root)	74.181
SRR2967015	Control (Tissue:root)	88.447

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	46.556
SRR9715740	Leave	81.667
SRR9715741	Leave	51.813
SRR9715739	Root	300.871
SRR9715742	Root	145.474
SRR9715743	Root	172.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.465
SRR8749028	MeJA induced 9h	4.474
SRR8749029	MeJA induced 9h	8.275
SRR8749030	Uninduced	1.785
SRR8749031	Uninduced	4.048
SRR8749032	Uninduced	5.846

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	46.730
SRR8400027	Control-Root	33.521