Gene detail information of Glyur000492s00023510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37560.10Acetamidase/Formamidase family protein
NRKHG09670.10fmdA [Gossypium arboreum]
COGYP_007171388.14.00E-165acetamidase/formamidase [Dactylococcopsis salina PCC 8305]
trEMBLtr|A0A072UPB4|A0A072UPB4_MEDTR0Acetamidase/formamidase, putative {ECO:0000313|EMBL:KEH31522.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004925281657539+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01455E3.5.1.49 EC:3.5.1.49 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Cyanoamino acid metabolismmap00460


Gene Ontology

molecular_function

GO:0016811  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000492s00023510.1PF03069.10FmdA_AmdA9736.60E-19
Glyur000492s00023510.1PF03069.10FmdA_AmdA734711.60E-155


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control341.309
SRR1783600control345.407
SRR1783602moderate drought stress490.631
SRR1811619moderate drought stress494.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain380.156
DRR006520Root Summer glycyrrhizin high producing strain375.796
DRR006521Root Winter glycyrrhizin high producing strain21.977
DRR006522Root Winter glycyrrhizin high producing strain21.231
DRR006523Root Summer glycyrrhizin low producing strain414.941
DRR006524Root Summer glycyrrhizin low producing strain411.873
DRR006525Leaf Summer glycyrrhizin high producing strain220.284
DRR006526Leaf Summer glycyrrhizin high producing strain216.695

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.536
SRR2868004Drought Stress(Tissue:root)47.294
SRR2967015Control (Tissue:root)27.366

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave89.459
SRR9715740Leave155.170
SRR9715741Leave117.943
SRR9715739Root152.261
SRR9715742Root164.711
SRR9715743Root151.122

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.204
SRR8749028MeJA induced 9h3.471
SRR8749029MeJA induced 9h3.731
SRR8749030Uninduced2.514
SRR8749031Uninduced0.474
SRR8749032Uninduced4.692

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root127.653
SRR8400027Control-Root151.502

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved