Gene detail information of Glyur000492s00023513.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G23070.12.00E-174Protein kinase superfamily protein
NRKEH31524.10casein kinase II subunit alpha-like protein [Medicago truncatula]
COGNP_868627.17.00E-16protein kinase yloP- serine/threonine protein kinase [Rhodopirellula baltica SH 1]
Swissprottr|O64816|CSK2P_ARATH0Casein kinase II subunit alpha, chloroplastic (Precursor)
trEMBLtr|A0A072UNW2|A0A072UNW2_MEDTR0Casein kinase II subunit alpha-like protein {ECO:0000313|EMBL:KEH31524.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004925992464498+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03097CSNK2A EC:2.7.11.1 Ribosome biogenesis in eukaryotes map03008
Wnt signaling pathwaymap04310
NF-kappa B signaling pathwaymap04064
Mitophagy - yeastmap04139
Adherens junctionmap04520
Circadian rhythm - plantmap04712
Measlesmap05162
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000492s00023513.1PF00069.20Pkinase1264051.30E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.897
SRR1783600control43.050
SRR1783602moderate drought stress38.121
SRR1811619moderate drought stress38.039

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.824
DRR006520Root Summer glycyrrhizin high producing strain33.416
DRR006521Root Winter glycyrrhizin high producing strain47.788
DRR006522Root Winter glycyrrhizin high producing strain47.356
DRR006523Root Summer glycyrrhizin low producing strain37.633
DRR006524Root Summer glycyrrhizin low producing strain38.055
DRR006525Leaf Summer glycyrrhizin high producing strain34.237
DRR006526Leaf Summer glycyrrhizin high producing strain34.341

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)68.433
SRR2868004Drought Stress(Tissue:root)68.439
SRR2967015Control (Tissue:root)61.476

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.333
SRR9715740Leave47.482
SRR9715741Leave50.241
SRR9715739Root33.068
SRR9715742Root33.903
SRR9715743Root33.467

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.552
SRR8749028MeJA induced 9h33.723
SRR8749029MeJA induced 9h28.677
SRR8749030Uninduced27.935
SRR8749031Uninduced31.995
SRR8749032Uninduced27.567

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root53.965
SRR8400027Control-Root47.931

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved