Gene detail information of Glyur000492s00023518.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14820.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_006579940.1 | 0 | PREDICTED: BTB/POZ domain-containing protein NPY2-like isoform X1 [Glycine max] |
| Swissprot | tr|O80970|NPY2_ARATH | 0 | BTB/POZ domain-containing protein NPY2 |
| trEMBL | tr|I1K2D2|I1K2D2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G22380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00492 | 88792 | 94881 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000492s00023518.1 | PF00651.26 | BTB | 28 | 117 | 8.50E-09 |
| Glyur000492s00023518.1 | PF03000.9 | NPH3 | 209 | 461 | 6.60E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.308 |
| SRR1783600 | control | 1.243 |
| SRR1783602 | moderate drought stress | 2.248 |
| SRR1811619 | moderate drought stress | 2.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.996 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.020 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.541 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.512 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.764 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.727 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.198 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.824 |
| SRR2967015 | Control (Tissue:root) | 7.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.593 |
| SRR9715740 | Leave | 3.473 |
| SRR9715741 | Leave | 1.508 |
| SRR9715739 | Root | 0.539 |
| SRR9715742 | Root | 4.022 |
| SRR9715743 | Root | 3.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.041 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.627 |
| SRR8400027 | Control-Root | 13.513 |