Gene detail information of Glyur000492s00023524.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37650.1 | 2.00E-144 | GRAS family transcription factor |
| NR | XP_003608528.1 | 0 | GRAS family transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9SZF7|SHR_ARATH | 0 | Protein SHORT-ROOT |
| trEMBL | tr|G7JE24|G7JE24_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AES90725.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00492 | 141344 | 142888 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000492s00023524.1 | PF03514.9 | GRAS | 143 | 513 | 1.10E-107 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.649 |
| SRR1783600 | control | 1.117 |
| SRR1783602 | moderate drought stress | 0.647 |
| SRR1811619 | moderate drought stress | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.591 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.518 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.425 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.514 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.394 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.206 |
| SRR2967015 | Control (Tissue:root) | 6.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.973 |
| SRR9715740 | Leave | 0.435 |
| SRR9715741 | Leave | 0.556 |
| SRR9715739 | Root | 7.797 |
| SRR9715742 | Root | 5.510 |
| SRR9715743 | Root | 4.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.184 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.079 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.351 |
| SRR8400027 | Control-Root | 7.340 |