Gene detail information of Glyur000494s00017407.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60580.3 | 1.00E-120 | RING/U-box superfamily protein |
| NR | XP_004505986.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase MARCH7-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|V7AHC1|V7AHC1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04243.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 96971 | 101880 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000494s00017407.2 | PF12906.2 | RINGv | 266 | 313 | 8.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.891 |
| SRR1783600 | control | 10.862 |
| SRR1783602 | moderate drought stress | 13.158 |
| SRR1811619 | moderate drought stress | 13.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.564 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.406 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.589 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.950 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.722 |
| SRR2967015 | Control (Tissue:root) | 31.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.519 |
| SRR9715740 | Leave | 46.705 |
| SRR9715741 | Leave | 50.602 |
| SRR9715739 | Root | 16.786 |
| SRR9715742 | Root | 40.260 |
| SRR9715743 | Root | 34.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.646 |
| SRR8749028 | MeJA induced 9h | 2.379 |
| SRR8749029 | MeJA induced 9h | 1.519 |
| SRR8749030 | Uninduced | 1.172 |
| SRR8749031 | Uninduced | 0.572 |
| SRR8749032 | Uninduced | 0.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.628 |
| SRR8400027 | Control-Root | 38.726 |