Gene detail information of Glyur000494s00017408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28450.10zinc finger (CCCH-type) family protein
NRXP_004505985.10PREDICTED: zinc finger CCCH domain-containing protein 24-like [Cicer arietinum]
COGYP_002508056.12.00E-26RNA methyltransferase [Halothermothrix orenii H 168]
Swissprottr|Q8L7S3|C3H24_ARATH0Zinc finger CCCH domain-containing protein 24
trEMBLtr|G7JPD7|G7JPD7_MEDTR0Zinc finger CCCH domain protein {ECO:0000313|EMBL:AES88592.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00494107675113258-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0008173  RNA methyltransferase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000494s00017408.1PF00642.19zf-CCCH68952.60E-05
Glyur000494s00017408.1PF13847.1Methyltransf_315676256.90E-12
Glyur000494s00017408.1PF05958.6tRNA_U5-meth_tr6947455.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.980
SRR1783600control18.163
SRR1783602moderate drought stress15.557
SRR1811619moderate drought stress15.543

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.494
DRR006520Root Summer glycyrrhizin high producing strain22.804
DRR006521Root Winter glycyrrhizin high producing strain19.395
DRR006522Root Winter glycyrrhizin high producing strain19.053
DRR006523Root Summer glycyrrhizin low producing strain20.513
DRR006524Root Summer glycyrrhizin low producing strain20.979
DRR006525Leaf Summer glycyrrhizin high producing strain10.767
DRR006526Leaf Summer glycyrrhizin high producing strain10.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.772
SRR2868004Drought Stress(Tissue:root)25.714
SRR2967015Control (Tissue:root)24.178

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.388
SRR9715740Leave10.911
SRR9715741Leave13.687
SRR9715739Root12.649
SRR9715742Root22.431
SRR9715743Root20.605

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.965
SRR8749028MeJA induced 9h25.240
SRR8749029MeJA induced 9h25.663
SRR8749030Uninduced7.585
SRR8749031Uninduced5.027
SRR8749032Uninduced10.021

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.191
SRR8400027Control-Root28.954

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved