Gene detail information of Glyur000494s00017413.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G07980.12.00E-22nuclear factor Y, subunit C10
NRXP_003606405.11.27E-61DNA polymerase epsilon subunit [Medicago truncatula]
Swissprottr|Q8LCG7|NFYC2_ARATH1.00E-08Nuclear transcription factor Y subunit C-2
trEMBLtr|G7JPE7|G7JPE7_MEDTR5.00E-62Nuclear transcription factor Y subunit C7 {ECO:0000313|EMBL:AFK49676.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00494145827149063+


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000494s00017413.1PF00808.18CBFD_NFYB_HMF941563.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.300
SRR1783600control8.551
SRR1783602moderate drought stress11.233
SRR1811619moderate drought stress11.227

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.249
DRR006520Root Summer glycyrrhizin high producing strain31.546
DRR006521Root Winter glycyrrhizin high producing strain72.446
DRR006522Root Winter glycyrrhizin high producing strain70.418
DRR006523Root Summer glycyrrhizin low producing strain24.256
DRR006524Root Summer glycyrrhizin low producing strain24.297
DRR006525Leaf Summer glycyrrhizin high producing strain13.909
DRR006526Leaf Summer glycyrrhizin high producing strain13.979

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.586
SRR2868004Drought Stress(Tissue:root)37.250
SRR2967015Control (Tissue:root)30.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.608
SRR9715740Leave20.815
SRR9715741Leave12.254
SRR9715739Root0.815
SRR9715742Root6.591
SRR9715743Root5.523

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h69.638
SRR8749028MeJA induced 9h32.641
SRR8749029MeJA induced 9h67.865
SRR8749030Uninduced20.691
SRR8749031Uninduced9.504
SRR8749032Uninduced15.341

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.203
SRR8400027Control-Root31.020

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved