Gene detail

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Gene detail information of Glyur000495s00023461.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31180.1	2.00E-63	myb domain protein 14
NR	XP_004497845.1	3.98E-121	PREDICTED: myb-related protein Myb4-like [Cicer arietinum]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	4.00E-76	Myb-related protein Myb4
trEMBL	tr\|I1JB85\|I1JB85_SOYBN	3.00E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G00820.1}

Sequence

Transcript Sequence

>Glyur000495s00023461.1
GAAAGAGAGCAGCAACAAGAGAAGCTTAACTAGCACTCCTCGACAATAATAATTTGAAGATGGTTAGAGCTCCTTGCTGTGAAAAGAAGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATGAAATCCTCATCTCCTACATCCAAATACATGGCCATGGCAATTGGCGTGCCCTCCCTAAGCATGCTGGACTATTAAGATGTGGGAAGAGCTGTAGACTGCGGTGGATTAACTATTTAAGACCTGATATCAAGAGAGGGAATTTCACTAATGAAGAAGAGGATATTATTATTAAGATGCATGAGTTGCTGGGGAACAGGTGGTCAGCAATTGCTGCAAAATTACCAGGAAGAACTGACAATGAGATAAAAAATGTTTGGCACACCCACTTGAAGAAGAGTCTGCTTAATAAAAACCAACCCAATTCAGATCATAACAAAAGAGTTTCCAAAAAACCAAAAATCAAACGATCTGATTCCAATTCCAGCACACTAACTCATCACTCAGAACCTCATTTCCTTGAAATGGAGACTACTACTACTACCACTACTACTACATCATCATCAGCTTGCACTACTTTTTCCAGTGATTTTTCATCATCAGAAGGAAAANTTGATACTGAAGACTACTCAACAATAGTGCCCGAAATTGATGAAACCTTTTGGTCAGAGGAAGCAACAATGGATGATGAAAACTCCACCACCACCACCACCACCATGCCATATTCAAGTGAATTACCAACTCATGATGATCAATTCCCATTTAATTCAGAGGAAATTACCTTCCAACAGAGTTGTAATGGTTATAGTTCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATTAGATCCGGGCCAGAGTCAATAGAATTGCCAGAGTTCTGAATTTTTCATGAACAAATTAATTTTATTAATTAAGTTATCTTACTAAATTCATTCTGACAGTTACAACGAGTGAAGGGGTACATTATATAATTTTCTGAATTTCTGTAGTGGGGGCATTGTTGTCTCCAGTTATTCATTGGTACTAGAGGGTAATAATGATGTGATGTAACTATGCATGCATTATGCATAGAAACAAAAATAGGAAAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00495	52892	55248	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000495s00023461.1	PF00249.26	Myb_DNA-binding	14	61	1.40E-16
Glyur000495s00023461.1	PF00249.26	Myb_DNA-binding	67	112	4.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.099
SRR1783600	control	0.033
SRR1783602	moderate drought stress	0.186
SRR1811619	moderate drought stress	0.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.199
DRR006524	Root Summer glycyrrhizin low producing strain	0.150
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.621

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.092
SRR2868004	Drought Stress(Tissue:root)	4.904
SRR2967015	Control (Tissue:root)	4.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	42.963
SRR9715740	Leave	22.724
SRR9715741	Leave	88.809
SRR9715739	Root	0.122
SRR9715742	Root	0.558
SRR9715743	Root	0.486

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.812
SRR8749028	MeJA induced 9h	2.814
SRR8749029	MeJA induced 9h	2.984
SRR8749030	Uninduced	36.111
SRR8749031	Uninduced	158.635
SRR8749032	Uninduced	51.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.729
SRR8400027	Control-Root	1.184