Gene detail information of Glyur000495s00023462.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43330.13.00E-172Lactate/malate dehydrogenase family protein
NRAFK38114.10unknown [Lotus japonicus]
COGYP_003118637.12.00E-119malate dehydrogenase [Catenulispora acidiphila DSM 44928]
Swissprottr|O48905|MDHC_MEDSA0Malate dehydrogenase, cytoplasmic
trEMBLtr|I3SCX2|I3SCX2_LOTJA0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004956412867860-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00025MDH1 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000495s00023462.1PF00056.18Ldh_1_N61531.40E-32
Glyur000495s00023462.1PF02866.13Ldh_1_C1573251.00E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control141.928
SRR1783600control142.728
SRR1783602moderate drought stress82.238
SRR1811619moderate drought stress81.904

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain114.241
DRR006520Root Summer glycyrrhizin high producing strain113.075
DRR006521Root Winter glycyrrhizin high producing strain82.965
DRR006522Root Winter glycyrrhizin high producing strain81.049
DRR006523Root Summer glycyrrhizin low producing strain74.542
DRR006524Root Summer glycyrrhizin low producing strain74.335
DRR006525Leaf Summer glycyrrhizin high producing strain128.443
DRR006526Leaf Summer glycyrrhizin high producing strain127.440

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)442.243
SRR2868004Drought Stress(Tissue:root)304.662
SRR2967015Control (Tissue:root)292.652

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave258.104
SRR9715740Leave242.259
SRR9715741Leave287.536
SRR9715739Root147.642
SRR9715742Root142.485
SRR9715743Root135.415

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h134.152
SRR8749028MeJA induced 9h101.769
SRR8749029MeJA induced 9h87.643
SRR8749030Uninduced24.549
SRR8749031Uninduced15.971
SRR8749032Uninduced37.667

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root175.121
SRR8400027Control-Root145.729

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved