Gene detail information of Glyur000496s00030944.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28860.10ATP binding cassette subfamily B19
NRXP_003543769.10PREDICTED: ABC transporter B family member 19-like isoform X1 [Glycine max]
COGYP_003134859.12.00E-124ABC-type multidrug transport system, ATPase and permease component [Saccharomonospora viridis DSM 43017]
Swissprottr|Q9LJX0|AB19B_ARATH0ABC transporter B family member 19
trEMBLtr|I1LWJ6|I1LWJ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G05300.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004961050520082-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000496s00030944.1PF00664.18ABC_membrane473182.10E-48
Glyur000496s00030944.1PF00005.22ABC_tran3845385.30E-31
Glyur000496s00030944.1PF00664.18ABC_membrane6949695.60E-48
Glyur000496s00030944.1PF00005.22ABC_tran103511831.30E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.398
SRR1783600control0.384
SRR1783602moderate drought stress0.729
SRR1811619moderate drought stress0.716

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.521
DRR006520Root Summer glycyrrhizin high producing strain3.438
DRR006521Root Winter glycyrrhizin high producing strain0.228
DRR006522Root Winter glycyrrhizin high producing strain0.223
DRR006523Root Summer glycyrrhizin low producing strain1.132
DRR006524Root Summer glycyrrhizin low producing strain1.110
DRR006525Leaf Summer glycyrrhizin high producing strain6.155
DRR006526Leaf Summer glycyrrhizin high producing strain6.142

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.351
SRR2868004Drought Stress(Tissue:root)21.374
SRR2967015Control (Tissue:root)25.281

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.586
SRR9715740Leave7.909
SRR9715741Leave17.879
SRR9715739Root0.618
SRR9715742Root5.144
SRR9715743Root4.701

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.428
SRR8749028MeJA induced 9h1.288
SRR8749029MeJA induced 9h0.698
SRR8749030Uninduced0.123
SRR8749031Uninduced0.056
SRR8749032Uninduced0.167

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.522
SRR8400027Control-Root10.134

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved