Gene detail information of Glyur000496s00030953.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53570.43.00E-26FUS3-complementing gene 1
NRAAA57117.12.51E-28protein kinase [Arabidopsis thaliana]
Swissprottr|P51566|AFC1_ARATH1.00E-30Serine/threonine-protein kinase AFC1
trEMBLtr|B9DH08|B9DH08_ARATH9.00E-29AT3G53570 protein {ECO:0000313|EMBL:BAH20025.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004969496896172+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000496s00030953.2PF00069.20Pkinase12942.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.111
SRR1783600control0.324
SRR1783602moderate drought stress0.128
SRR1811619moderate drought stress0.437

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.230
DRR006520Root Summer glycyrrhizin high producing strain0.299
DRR006521Root Winter glycyrrhizin high producing strain0.368
DRR006522Root Winter glycyrrhizin high producing strain0.280
DRR006523Root Summer glycyrrhizin low producing strain0.072
DRR006524Root Summer glycyrrhizin low producing strain0.802
DRR006525Leaf Summer glycyrrhizin high producing strain0.178
DRR006526Leaf Summer glycyrrhizin high producing strain0.245

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.060
SRR2868004Drought Stress(Tissue:root)0.168
SRR2967015Control (Tissue:root)0.155

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.080
SRR9715740Leave0.000
SRR9715741Leave0.000
SRR9715739Root0.035
SRR9715742Root0.032
SRR9715743Root0.095

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.128
SRR8749028MeJA induced 9h0.112
SRR8749029MeJA induced 9h0.032
SRR8749030Uninduced0.040
SRR8749031Uninduced0.048
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.259
SRR8400027Control-Root0.116

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved