Gene detail information of Glyur000496s00030957.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28920.1 | 3.00E-46 | homeobox protein 34 |
| NR | XP_004489395.1 | 1.37E-117 | PREDICTED: transcription factor HB29-like [Cicer arietinum] |
| Swissprot | tr|Q9LXG0|ZHD8_ARATH | 1.00E-75 | Zinc-finger homeodomain protein 8 |
| trEMBL | tr|G7KKI2|G7KKI2_MEDTR | 7.00E-106 | Transcription factor HB29-like protein {ECO:0000313|EMBL:AES74711.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00496 | 139018 | 139953 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000496s00030957.1 | PF04770.7 | ZF-HD_dimer | 79 | 136 | 5.30E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.040 |
| SRR1783600 | control | 4.809 |
| SRR1783602 | moderate drought stress | 14.841 |
| SRR1811619 | moderate drought stress | 16.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.596 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.253 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.858 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 44.506 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.130 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.928 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.215 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.618 |
| SRR2967015 | Control (Tissue:root) | 4.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 37.359 |
| SRR9715740 | Leave | 63.832 |
| SRR9715741 | Leave | 39.193 |
| SRR9715739 | Root | 3.964 |
| SRR9715742 | Root | 13.066 |
| SRR9715743 | Root | 13.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.488 |
| SRR8749028 | MeJA induced 9h | 0.398 |
| SRR8749029 | MeJA induced 9h | 0.192 |
| SRR8749030 | Uninduced | 0.282 |
| SRR8749031 | Uninduced | 0.005 |
| SRR8749032 | Uninduced | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.041 |
| SRR8400027 | Control-Root | 34.802 |