Gene detail information of Glyur000497s00020181.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60190.12.00E-138ARM repeat superfamily protein
NRXP_003608976.10U-box domain-containing protein [Medicago truncatula]
COGYP_001957949.18.00E-11hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|O80742|PUB19_ARATH8.00E-170U-box domain-containing protein 19
trEMBLtr|G7JPU4|G7JPU4_MEDTR0Spotted leaf protein, putative {ECO:0000313|EMBL:AES91173.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004971710119170-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000497s00020181.1PF04564.10U-box2823511.20E-20
Glyur000497s00020181.1PF00514.18Arm4164521.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.159
SRR1783600control0.136
SRR1783602moderate drought stress0.444
SRR1811619moderate drought stress0.473

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.662
DRR006520Root Summer glycyrrhizin high producing strain54.358
DRR006521Root Winter glycyrrhizin high producing strain0.809
DRR006522Root Winter glycyrrhizin high producing strain0.789
DRR006523Root Summer glycyrrhizin low producing strain97.639
DRR006524Root Summer glycyrrhizin low producing strain97.919
DRR006525Leaf Summer glycyrrhizin high producing strain63.142
DRR006526Leaf Summer glycyrrhizin high producing strain62.352

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.393
SRR2868004Drought Stress(Tissue:root)2.914
SRR2967015Control (Tissue:root)7.154

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.985
SRR9715740Leave15.155
SRR9715741Leave18.700
SRR9715739Root9.861
SRR9715742Root28.939
SRR9715743Root26.474

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.572
SRR8749028MeJA induced 9h12.573
SRR8749029MeJA induced 9h1.040
SRR8749030Uninduced0.404
SRR8749031Uninduced0.074
SRR8749032Uninduced0.096

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.209
SRR8400027Control-Root5.471

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved