Gene detail information of Glyur000497s00020187.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40250.1 | 8.00E-56 | RING/U-box superfamily protein |
| NR | XP_003608945.1 | 3.59E-135 | RING finger protein [Medicago truncatula] |
| Swissprot | tr|Q9FL07|ATL46_ARATH | 5.00E-86 | RING-H2 finger protein ATL46 |
| trEMBL | tr|G7JNT9|G7JNT9_MEDTR | 1.00E-135 | RING-H2 finger protein ATL47 {ECO:0000313|EMBL:AES91142.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00497 | 54288 | 55379 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000497s00020187.1 | PF13639.1 | zf-RING_2 | 148 | 191 | 2.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.539 |
| SRR1783600 | control | 3.740 |
| SRR1783602 | moderate drought stress | 2.225 |
| SRR1811619 | moderate drought stress | 2.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.788 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.353 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.199 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.664 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.170 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.526 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.905 |
| SRR2967015 | Control (Tissue:root) | 1.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.183 |
| SRR9715740 | Leave | 0.057 |
| SRR9715741 | Leave | 0.237 |
| SRR9715739 | Root | 1.206 |
| SRR9715742 | Root | 1.681 |
| SRR9715743 | Root | 1.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.138 |
| SRR8749028 | MeJA induced 9h | 0.120 |
| SRR8749029 | MeJA induced 9h | 0.263 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.898 |
| SRR8400027 | Control-Root | 4.860 |