Gene detail information of Glyur000497s00020189.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41340.18.00E-65ubiquitin conjugating enzyme 4
NRXP_007155401.14.26E-113hypothetical protein PHAVU_003G198300g [Phaseolus vulgaris]
COGYP_008797956.15.00E-14ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42749|UBC5_ARATH4.00E-85Ubiquitin-conjugating enzyme E2 5
trEMBLtr|V7CDN0|V7CDN0_PHAVU2.00E-113Uncharacterized protein {ECO:0000313|EMBL:ESW27395.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004975928761284-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10576UBE2H, UBC8 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000497s00020189.1PF00179.21UQ_con61277.00E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.508
SRR1783600control5.668
SRR1783602moderate drought stress5.757
SRR1811619moderate drought stress5.611

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.467
DRR006520Root Summer glycyrrhizin high producing strain14.578
DRR006521Root Winter glycyrrhizin high producing strain15.045
DRR006522Root Winter glycyrrhizin high producing strain14.662
DRR006523Root Summer glycyrrhizin low producing strain12.670
DRR006524Root Summer glycyrrhizin low producing strain13.932
DRR006525Leaf Summer glycyrrhizin high producing strain8.719
DRR006526Leaf Summer glycyrrhizin high producing strain8.804

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.547
SRR2868004Drought Stress(Tissue:root)27.976
SRR2967015Control (Tissue:root)23.508

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.943
SRR9715740Leave17.979
SRR9715741Leave17.044
SRR9715739Root11.247
SRR9715742Root10.210
SRR9715743Root8.491

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.649
SRR8749028MeJA induced 9h10.749
SRR8749029MeJA induced 9h14.485
SRR8749030Uninduced8.050
SRR8749031Uninduced8.868
SRR8749032Uninduced9.488

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.143
SRR8400027Control-Root30.219

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved