Gene detail information of Glyur000497s00020199.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10200.1 | 2.00E-66 | GATA type zinc finger transcription factor family protein |
| NR | XP_003550749.1 | 6.51E-120 | PREDICTED: pollen-specific protein SF3-like [Glycine max] |
| Swissprot | tr|Q94JX5|WLIM1_ARATH | 2.00E-83 | LIM domain-containing protein WLIM1 {ECO:0000305} |
| trEMBL | tr|K7MKS0|K7MKS0_SOYBN | 2.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G10030.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00497 | 122455 | 125118 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000497s00020199.1 | PF00412.17 | LIM | 11 | 65 | 1.10E-11 |
| Glyur000497s00020199.1 | PF00412.17 | LIM | 110 | 159 | 7.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.834 |
| SRR1783600 | control | 4.300 |
| SRR1783602 | moderate drought stress | 5.404 |
| SRR1811619 | moderate drought stress | 5.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.529 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.411 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.379 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.057 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.071 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 48.577 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.439 |
| SRR2967015 | Control (Tissue:root) | 27.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.560 |
| SRR9715740 | Leave | 1.260 |
| SRR9715741 | Leave | 0.891 |
| SRR9715739 | Root | 0.463 |
| SRR9715742 | Root | 1.435 |
| SRR9715743 | Root | 1.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.710 |
| SRR8749028 | MeJA induced 9h | 1.821 |
| SRR8749029 | MeJA induced 9h | 10.491 |
| SRR8749030 | Uninduced | 3.458 |
| SRR8749031 | Uninduced | 2.361 |
| SRR8749032 | Uninduced | 3.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.556 |
| SRR8400027 | Control-Root | 3.556 |