Gene detail information of Glyur000498s00016165.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40830.3 | 5.00E-23 | RING-H2 finger C1A |
| NR | XP_003547055.2 | 1.17E-135 | PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LPN7|RNG1L_ARATH | 1.00E-27 | E3 ubiquitin-protein ligase RING1-like |
| trEMBL | tr|K7M9N3|K7M9N3_SOYBN | 4.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05251.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00498 | 113098 | 114451 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000498s00016165.1 | PF13639.1 | zf-RING_2 | 199 | 241 | 2.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.898 |
| SRR1783600 | control | 1.762 |
| SRR1783602 | moderate drought stress | 1.358 |
| SRR1811619 | moderate drought stress | 1.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.662 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.748 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.930 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.564 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.569 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.104 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.379 |
| SRR2967015 | Control (Tissue:root) | 2.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.254 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.248 |
| SRR9715739 | Root | 0.918 |
| SRR9715742 | Root | 0.791 |
| SRR9715743 | Root | 1.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.640 |
| SRR8749028 | MeJA induced 9h | 1.435 |
| SRR8749029 | MeJA induced 9h | 0.285 |
| SRR8749030 | Uninduced | 0.653 |
| SRR8749031 | Uninduced | 0.574 |
| SRR8749032 | Uninduced | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.761 |
| SRR8400027 | Control-Root | 3.464 |