Gene detail information of Glyur000500s00018147.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73760.1 | 1.00E-61 | RING/U-box superfamily protein |
| NR | KHN21637.1 | 3.67E-167 | E3 ubiquitin ligase BIG BROTHER [Glycine soja] |
| Swissprot | tr|O49500|MBR2_ARATH | 3.00E-28 | E3 ubiquitin-protein ligase MBR2 |
| trEMBL | tr|I1K5G8|I1K5G8_SOYBN | 1.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00500 | 17476 | 21321 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000500s00018147.1 | PF13639.1 | zf-RING_2 | 306 | 348 | 4.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.812 |
| SRR1783600 | control | 18.873 |
| SRR1783602 | moderate drought stress | 16.091 |
| SRR1811619 | moderate drought stress | 16.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.641 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.311 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 74.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 72.824 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.501 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.035 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.204 |
| SRR2967015 | Control (Tissue:root) | 15.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.321 |
| SRR9715740 | Leave | 30.138 |
| SRR9715741 | Leave | 24.229 |
| SRR9715739 | Root | 10.797 |
| SRR9715742 | Root | 15.260 |
| SRR9715743 | Root | 14.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.046 |
| SRR8749028 | MeJA induced 9h | 17.920 |
| SRR8749029 | MeJA induced 9h | 17.843 |
| SRR8749030 | Uninduced | 5.431 |
| SRR8749031 | Uninduced | 2.537 |
| SRR8749032 | Uninduced | 2.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.619 |
| SRR8400027 | Control-Root | 16.101 |