Gene detail information of Glyur000500s00018152.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G01830.2 | 0 | CHASE domain containing histidine kinase protein |
NR | XP_003530935.1 | 0 | PREDICTED: histidine kinase 4-like [Glycine max] |
COG | YP_006373193.1 | 2.00E-83 | multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065] |
Swissprot | tr|Q9C5U0|AHK4_ARATH | 0 | Histidine kinase 4 |
trEMBL | tr|I1KQE9|I1KQE9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G05370.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00500 | 65384 | 73453 | + |
Gene family
Gene family | subfamily |
---|---|
Transcription Factors Family | Orphans |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K14489 | AHK2_3_4 | EC:2.7.13.3 | Plant hormone signal transduction | map04075 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000500s00018152.1 | PF03924.8 | CHASE | 109 | 293 | 1.40E-40 |
Glyur000500s00018152.1 | PF00512.20 | HisKA | 381 | 446 | 7.40E-19 |
Glyur000500s00018152.1 | PF02518.21 | HATPase_c | 499 | 682 | 3.90E-33 |
Glyur000500s00018152.1 | PF00072.19 | Response_reg | 867 | 934 | 1.60E-13 |
Glyur000500s00018152.1 | PF00072.19 | Response_reg | 956 | 998 | 4.30E-05 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 7.339 |
SRR1783600 | control | 7.363 |
SRR1783602 | moderate drought stress | 7.472 |
SRR1811619 | moderate drought stress | 7.385 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 22.904 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 22.721 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.229 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.235 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 14.066 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 14.492 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.792 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.646 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 27.085 |
SRR2868004 | Drought Stress(Tissue:root) | 20.340 |
SRR2967015 | Control (Tissue:root) | 23.768 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.097 |
SRR9715740 | Leave | 1.220 |
SRR9715741 | Leave | 1.860 |
SRR9715739 | Root | 1.472 |
SRR9715742 | Root | 14.083 |
SRR9715743 | Root | 13.654 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 8.458 |
SRR8749028 | MeJA induced 9h | 4.564 |
SRR8749029 | MeJA induced 9h | 3.424 |
SRR8749030 | Uninduced | 3.716 |
SRR8749031 | Uninduced | 2.458 |
SRR8749032 | Uninduced | 1.723 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 19.747 |
SRR8400027 | Control-Root | 29.656 |