Gene detail

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Gene detail information of Glyur000500s00018166.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14810.1	2.00E-172	semialdehyde dehydrogenase family protein
NR	XP_004503334.1	0	PREDICTED: aspartate-semialdehyde dehydrogenase-like [Cicer arietinum]
COG	YP_005444446.1	3.00E-142	aspartate-semialdehyde dehydrogenase [Phycisphaera mikurensis NBRC 102666]
trEMBL	tr\|G7LBH4\|G7LBH4_MEDTR	0	Aspartate-semialdehyde dehydrogenase {ECO:0000313\|EMBL:AET05461.1}

Sequence

Transcript Sequence

>Glyur000500s00018166.1
GAAGTCCCCACCCAGTAGATCTGTGTTTTCCTTTACAATACTGTCACGTGTTATATTTAATTATTATTTATATACCCTTAATCATCCAAGTCCACCTTTGCATTGGTCTAAACTCTAAACAAGGGAAATCAATATTGCTTTCTAGTTTCTACCCACTGAGACAAGCGAAGGGGCTAGGAGGACAGGAAGCATAAAAAGTCAATTCTACCCCCGTCGCTCTGTTTTCCGTTNTCTACTACCTCGTCTCGTCCCCCTGTTTTTGCTTTGCTTTAGTANTTCACTTCACTTCCCCAACAACAGCCGCCAAGACATTCCACACTTTCTCTCTCTCTATAAGAGTAAGAGTAAGTACTCAACCCAACCCAACCCAACCCACCACACACTCTCTCTCTCTCTATCTCTAACTAAACCTCCGATGGCAGCATCACTATCTCTTTCGCGGCACACCCACCTCTTCTCCTCTACCCTCCAGACCCGGCCCAAGCCCAGATACGCGGGCCCGGGTAAGATCCGAATGTCCCTCAAAGAAGACGGACCCTCCATCGCGGTGGTTGGGGTGACCGGCGCCGTCGGTCAAGAGTTCCTCTCCGTCCTCTCCGACCGCGACTTCCCCTACCGCTCCATAAAAATGCTGGCGTCGAAGCGCTCCGCCGGCCGCCGCATGACGTTCGAGGAGAAGGAGTATGTGGTGGAGGAGCTGACGGCGGAGAGCTTCGACGGCGTCGACATTGCTCTGTTCAGCGCCGGCGGGTCCATCAGCAAGGAGTTCGGGCCCATCGCGGTGGATCGGGGGAGCATAGTGGTGGACAATAGCTCGGCGTTTCGGATGGACGAGAAGGTTCCACTGGTGATCCCTGAGGTGAACCCTGAAGCAATGCACAACATCAAGCTTGGAATGGGAAAAGGTGCCCTTATCGCCAACCCCAATTGTTCCACCATTATTTGCTTAGTCGCAGCTACCCCTCTTCATCGACGCGCCAAGGTGTTACGTATGGTTGTTAGTACCTATCAAGCTGCTAGTGGTGCTGGTGCTGCTGCCATGGAAGAGCTTGAGCTGCAAACTCGTGAGGTATTGGAAGGAAAATCACCAACATGTAACATATTTAAGCAACAGTATGCTTTTAATCTGTTCTCGCACAATGCACCTGTTCTTTCAAACGGATATAATGAAGAGGAAATGAAAATGGTCAAGGAGACAAGAAAAATCTGGAATGACAAGGACGTTAAAGTGACAGCTACGTGTATACGAGTTCCTGTCATGAGGGCTCATGCTGAGAGTGTCAACCTTCAGTTCGAGAGACCCCTTGATGAGGACACTGCAAGAGATATTTTGAAGAATGCTCCAGGTGTAGTGGTTATTGATGACCGTGAATCCAATCGATTTCCTACTCCATTGGAAGTGTCAAATAAGGATGATGTTGCTGTCGGCAGGATTCGCCGTGACCTGTCTCAGGATGGGAATCAAGGGTTGGACATATTTGTATGTGGGGATCAAATTCGTAAAGGAGCTGCACTTAACGCAATCCAGATTGCTGAGATGTTGCTATGAGTTCTGATATTTCAAGGTTGTGGTACTTCATCAGTTTTGTATCTGCTAGTTGGAAGCTGTTTTTCATTATTTTTGTGAGGTTTAAATAGTCTAAAGGTCTTTTTCAAGGATGTGGTAATGCACTAGCTCGAAACATTTCTAATATTGGTTATGNCAATGGAGATATTATCTAATGCTCTTTGATTTTTGAGCAAGAACATATGGAAAGCGATAATTACGCATACCAAATGTCCGGTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00500	149920	153617	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00133	asd	EC:1.2.1.11	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Lysine biosynthesis	map00300
			Monobactam biosynthesis	map00261

Gene Ontology

biological_process

GO:0008652 cellular amino acid biosynthetic process

GO:0009086 methionine biosynthetic process

GO:0009088 threonine biosynthetic process

GO:0009089 lysine biosynthetic process via diaminopimelate

GO:0009097 isoleucine biosynthetic process

GO:0055114 oxidation-reduction process

cellular_component GO:0005737 cytoplasm molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0004073 aspartate-semialdehyde dehydrogenase activity GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0046983 protein dimerization activity GO:0050661 NADP binding GO:0051287 NAD binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000500s00018166.1	PF01118.19	Semialdhyde_dh	43	156	5.10E-31
Glyur000500s00018166.1	PF02774.13	Semialdhyde_dhC	183	363	3.40E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.690
SRR1783600	control	57.852
SRR1783602	moderate drought stress	37.176
SRR1811619	moderate drought stress	36.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.746
DRR006520	Root Summer glycyrrhizin high producing strain	64.412
DRR006521	Root Winter glycyrrhizin high producing strain	48.881
DRR006522	Root Winter glycyrrhizin high producing strain	48.447
DRR006523	Root Summer glycyrrhizin low producing strain	18.016
DRR006524	Root Summer glycyrrhizin low producing strain	18.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.034

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	55.873
SRR2868004	Drought Stress(Tissue:root)	25.390
SRR2967015	Control (Tissue:root)	22.673

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	15.269
SRR9715740	Leave	5.974
SRR9715741	Leave	9.841
SRR9715739	Root	72.950
SRR9715742	Root	92.879
SRR9715743	Root	86.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.114
SRR8749028	MeJA induced 9h	66.886
SRR8749029	MeJA induced 9h	116.085
SRR8749030	Uninduced	112.586
SRR8749031	Uninduced	94.878
SRR8749032	Uninduced	166.797

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	91.345
SRR8400027	Control-Root	92.744