Gene detail

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Gene detail information of Glyur000501s00030939.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07010.1	4.00E-141	Pectin lyase-like superfamily protein
NR	XP_004515610.1	0	PREDICTED: probable pectate lyase 8-like [Cicer arietinum]
COG	YP_003976318.1	2.00E-15	pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprot	tr\|Q944R1\|PLY15_ARATH	0	Probable pectate lyase 15 (Precursor)
trEMBL	tr\|W9SB38\|W9SB38_9ROSA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur000501s00030939.1
ATGAAGGTGCATTCTCCAACACGGTTCACTCTTAGCGTTCTCGTTATGGCGCTGCTTTTGGCTTCCACCAATGCAATCGATGACAACGACAAACAGAAAGCGAGAGCATCAAGGACTATACGGAATCACACGCAGAGGAGGAATCTGAATTTTTTCTCGTGTGGGACGGGCAATCCAATTGATGACTGCTGGCGCTGCGACAAGCGTTGGTACCTCCGGCGAAAACGTTTGGCTAATTGCGGCATCGGTTTCGGTCGCAACGCCATTGGTGGCCGTGACGGAAGGTACTACGTGGTGACGGACCCAAGAGACGACGACCCCGTGAACCCCAAACCGGGCACCCTCCGTTACGGCGTCATCCAAGACAGGCCCCTATGGATCGTGTTCAAGAGGGACATGGTGATCACCCTCAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGATGGTCGTGGCGCCAATGTCCACATTGCCTTTGGTGCCTGCATTACCATCCAGTTCATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGCAAGCCCACTGGCAATGCTATGGTTCGAAGCTCCCCTTCGCATTATGGATGGAGGACACTCGCTGATGGCGATGCCATTTCCATCTTTGGGTCCAGTCACATTTGGATTGACCACAACTCACTCTCCAATTGTGCAGATGGCCTTATTGATGCTATTATGGGCTCCACTGCTATTACNATTTCCAATAACTACTTCACTCACCACAATGAGGTTATGCTACTGGGTCACAGTGACTCATACGTCCGCGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGCGCTGATCCCACGATCAACAGCCAAGGCAACAGATACCTTGCCCCTAAGAACCCTTTTGCTAAGGAGGGGCAACCACATGGAAACGTTGGAATTGGAGGTCTGAGGGAGACCTTATGCTCAATGGGAGCCTTTTTCACTTCGTCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCCAGTTTGGGTGCCAAATCATCTTCCTTAGTTGGTGCCTTGACCTCTGGTGCCGGTGTTATTAACTGTCGCAGGGGTGCCATGTGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00501	126737	131812	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
K01728	pel	EC:4.2.2.2	Quorum sensing	map02024

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000501s00030939.1	PF00544.14	Pec_lyase_C	136	287	6.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.317
SRR1783600	control	0.322
SRR1783602	moderate drought stress	0.373
SRR1811619	moderate drought stress	0.411

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.123
DRR006520	Root Summer glycyrrhizin high producing strain	0.236
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.656
DRR006524	Root Summer glycyrrhizin low producing strain	0.646
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.108

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	40.723
SRR2868004	Drought Stress(Tissue:root)	23.179
SRR2967015	Control (Tissue:root)	26.819

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.326
SRR9715740	Leave	0.000
SRR9715741	Leave	0.253
SRR9715739	Root	0.000
SRR9715742	Root	0.318
SRR9715743	Root	0.350

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.130
SRR8749028	MeJA induced 9h	0.082
SRR8749029	MeJA induced 9h	0.076
SRR8749030	Uninduced	0.087
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.040
SRR8400027	Control-Root	1.202