Gene detail information of Glyur000502s00019279.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26800.12.00E-136Aldolase superfamily protein
NRXP_003545429.10PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1 [Glycine max]
COGYP_005027230.13.00E-124isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS]
Swissprottr|O81027|HMGCL_ARATH0Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|I1M765|I1M765_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G04110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00502140140144381+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01640E4.1.3.4, HMGCL, hmgL EC:4.1.3.4 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Geraniol degradationmap00281
Peroxisomemap04146


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000502s00019279.1PF00682.14HMGL-like1403792.50E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.881
SRR1783600control1.831
SRR1783602moderate drought stress1.449
SRR1811619moderate drought stress1.590

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.735
DRR006520Root Summer glycyrrhizin high producing strain0.891
DRR006521Root Winter glycyrrhizin high producing strain1.281
DRR006522Root Winter glycyrrhizin high producing strain1.250
DRR006523Root Summer glycyrrhizin low producing strain0.501
DRR006524Root Summer glycyrrhizin low producing strain0.517
DRR006525Leaf Summer glycyrrhizin high producing strain3.993
DRR006526Leaf Summer glycyrrhizin high producing strain3.876

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.103
SRR2868004Drought Stress(Tissue:root)7.626
SRR2967015Control (Tissue:root)7.634

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.334
SRR9715740Leave5.086
SRR9715741Leave5.275
SRR9715739Root2.183
SRR9715742Root3.182
SRR9715743Root3.142

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.697
SRR8749028MeJA induced 9h1.887
SRR8749029MeJA induced 9h1.952
SRR8749030Uninduced3.517
SRR8749031Uninduced2.867
SRR8749032Uninduced2.151

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.932
SRR8400027Control-Root6.259

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved