Gene detail information of Glyur000504s00018065.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57050.10cystathionine beta-lyase
NRXP_004514725.10PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cicer arietinum]
COGYP_591057.14.00E-148cystathionine beta-lyase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|P53780|METC_ARATH0Cystathionine beta-lyase, chloroplastic (Precursor)
trEMBLtr|A0A072VLA8|A0A072VLA8_MEDTR0Cystathionine beta-lyase {ECO:0000313|EMBL:KEH42223.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00504732915296+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01760metC EC:4.4.1.8 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450


Gene Ontology

biological_process

GO:0071266  'de novo' L-methionine biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004121  cystathionine beta-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000504s00018065.2PF01053.15Cys_Met_Meta_PP924626.90E-143


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.612
SRR1783600control30.795
SRR1783602moderate drought stress31.068
SRR1811619moderate drought stress30.867

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.031
DRR006520Root Summer glycyrrhizin high producing strain27.881
DRR006521Root Winter glycyrrhizin high producing strain22.383
DRR006522Root Winter glycyrrhizin high producing strain21.693
DRR006523Root Summer glycyrrhizin low producing strain31.944
DRR006524Root Summer glycyrrhizin low producing strain32.044
DRR006525Leaf Summer glycyrrhizin high producing strain14.677
DRR006526Leaf Summer glycyrrhizin high producing strain14.267

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.160
SRR2868004Drought Stress(Tissue:root)48.318
SRR2967015Control (Tissue:root)46.995

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.451
SRR9715740Leave17.123
SRR9715741Leave20.362
SRR9715739Root37.001
SRR9715742Root31.149
SRR9715743Root31.168

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.137
SRR8749028MeJA induced 9h26.356
SRR8749029MeJA induced 9h20.852
SRR8749030Uninduced9.855
SRR8749031Uninduced6.191
SRR8749032Uninduced9.367

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.021
SRR8400027Control-Root45.265

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved