Gene detail information of Glyur000504s00018077.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57040.1 | 1.00E-63 | response regulator 9 |
| NR | XP_007162123.1 | 7.23E-113 | hypothetical protein PHAVU_001G125800g [Phaseolus vulgaris] |
| COG | NP_681812.1 | 9.00E-15 | two-component hybrid sensor & regulator [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|O80366|ARR9_ARATH | 1.00E-90 | Two-component response regulator ARR9 |
| trEMBL | tr|V7CVB1|V7CVB1_PHAVU | 3.00E-113 | Uncharacterized protein {ECO:0000313|EMBL:ESW34117.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00504 | 71786 | 74064 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000504s00018077.1 | PF00072.19 | Response_reg | 11 | 140 | 9.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.761 |
| SRR1783600 | control | 31.667 |
| SRR1783602 | moderate drought stress | 18.591 |
| SRR1811619 | moderate drought stress | 17.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 82.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 80.957 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.379 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 128.997 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 127.249 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 68.234 |
| SRR2868004 | Drought Stress(Tissue:root) | 56.613 |
| SRR2967015 | Control (Tissue:root) | 91.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.556 |
| SRR9715740 | Leave | 32.002 |
| SRR9715741 | Leave | 13.752 |
| SRR9715739 | Root | 2.760 |
| SRR9715742 | Root | 14.959 |
| SRR9715743 | Root | 12.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.389 |
| SRR8749028 | MeJA induced 9h | 28.620 |
| SRR8749029 | MeJA induced 9h | 61.811 |
| SRR8749030 | Uninduced | 2.439 |
| SRR8749031 | Uninduced | 2.969 |
| SRR8749032 | Uninduced | 5.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.141 |
| SRR8400027 | Control-Root | 93.261 |