Gene detail information of Glyur000504s00018082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57000.1 | 6.00E-90 | nucleolar essential protein-related |
| NR | AFK49467.1 | 9.22E-164 | unknown [Lotus japonicus] |
| COG | YP_004484336.1 | 1.00E-11 | suppressor Mra1 family protein [Methanotorris igneus Kol 5] |
| trEMBL | tr|I3TAC5|I3TAC5_LOTJA | 3.00E-164 | Uncharacterized protein {ECO:0000313|EMBL:AFK49467.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00504 | 117535 | 120464 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14568 | EMG1, NEP1 | EC:2.1.1.260 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000504s00018082.1 | PF03587.9 | EMG1 | 74 | 262 | 3.90E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.679 |
| SRR1783600 | control | 24.087 |
| SRR1783602 | moderate drought stress | 27.836 |
| SRR1811619 | moderate drought stress | 27.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.936 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.605 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.479 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.962 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.932 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.451 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.484 |
| SRR2967015 | Control (Tissue:root) | 39.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 39.104 |
| SRR9715740 | Leave | 29.170 |
| SRR9715741 | Leave | 46.886 |
| SRR9715739 | Root | 20.719 |
| SRR9715742 | Root | 29.676 |
| SRR9715743 | Root | 23.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.507 |
| SRR8749028 | MeJA induced 9h | 21.651 |
| SRR8749029 | MeJA induced 9h | 24.124 |
| SRR8749030 | Uninduced | 10.453 |
| SRR8749031 | Uninduced | 3.689 |
| SRR8749032 | Uninduced | 8.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 40.224 |
| SRR8400027 | Control-Root | 40.102 |