Gene detail information of Glyur000505s00021209.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15850.1 | 5.00E-41 | CONSTANS-like 1 |
| NR | ACB36912.1 | 1.05E-103 | CONSTANS-like protein 2 [Oxybasis rubra] |
| Swissprot | tr|Q96502|COL2_ARATH | 1.00E-94 | Zinc finger protein CONSTANS-LIKE 2 |
| trEMBL | tr|B4YA14|B4YA14_OXYRB | 4.00E-104 | CONSTANS-like protein 2 {ECO:0000313|EMBL:ACB36912.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00505 | 24462 | 26704 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000505s00021209.1 | PF00643.19 | zf-B_box | 17 | 58 | 1.40E-05 |
| Glyur000505s00021209.1 | PF00643.19 | zf-B_box | 59 | 104 | 3.10E-07 |
| Glyur000505s00021209.1 | PF06203.9 | CCT | 232 | 275 | 1.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.190 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.571 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.294 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.298 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.524 |
| SRR2967015 | Control (Tissue:root) | 0.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.104 |
| SRR9715740 | Leave | 2.018 |
| SRR9715741 | Leave | 1.673 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.095 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.446 |
| SRR8749028 | MeJA induced 9h | 1.145 |
| SRR8749029 | MeJA induced 9h | 0.240 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.069 |
| SRR8400027 | Control-Root | 0.104 |