Gene detail information of Glyur000505s00021210.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16000.1 | 0 | NSP-interacting kinase 1 |
| NR | XP_003555046.1 | 0 | PREDICTED: protein NSP-INTERACTING KINASE 1 isoformX1 [Glycine max] |
| COG | YP_004775215.1 | 5.00E-21 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9LFS4|NIK1_ARATH | 0 | Protein NSP-INTERACTING KINASE 1 (Precursor) |
| trEMBL | tr|I1N6J0|I1N6J0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G05200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00505 | 30404 | 34752 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000505s00021210.1 | PF08263.7 | LRRNT_2 | 35 | 73 | 3.60E-12 |
| Glyur000505s00021210.1 | PF13855.1 | LRR_8 | 124 | 184 | 1.50E-08 |
| Glyur000505s00021210.1 | PF00069.20 | Pkinase | 287 | 478 | 7.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.052 |
| SRR1783600 | control | 4.112 |
| SRR1783602 | moderate drought stress | 4.072 |
| SRR1811619 | moderate drought stress | 4.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.127 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.506 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.262 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.250 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.771 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.708 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.685 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.285 |
| SRR2967015 | Control (Tissue:root) | 24.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.566 |
| SRR9715740 | Leave | 12.530 |
| SRR9715741 | Leave | 7.551 |
| SRR9715739 | Root | 1.161 |
| SRR9715742 | Root | 6.377 |
| SRR9715743 | Root | 5.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.840 |
| SRR8749028 | MeJA induced 9h | 0.027 |
| SRR8749029 | MeJA induced 9h | 0.165 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.643 |
| SRR8400027 | Control-Root | 20.309 |