Gene detail information of Glyur000505s00021218.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G38710.13.00E-141Methylenetetrahydrofolate reductase family protein
NRXP_003541221.10PREDICTED: proline dehydrogenase 2, mitochondrial-like [Glycine max]
COGYP_006874449.15.00E-56Proline dehydrogenase [Emticicia oligotrophica DSM 17448]
Swissprottr|Q6NKX1|PROD2_ARATH6.00E-178Proline dehydrogenase 2, mitochondrial (Precursor)
trEMBLtr|K7LXR0|K7LXR0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G07110.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005057334977253-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00318PRODH EC:1.5.-.- Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0006562  proline catabolic process


molecular_function

GO:0004657  proline dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000505s00021218.1PF01619.13Pro_dh1823892.10E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.333
SRR1783600control3.482
SRR1783602moderate drought stress4.086
SRR1811619moderate drought stress4.206

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.228
DRR006520Root Summer glycyrrhizin high producing strain0.243
DRR006521Root Winter glycyrrhizin high producing strain0.829
DRR006522Root Winter glycyrrhizin high producing strain0.937
DRR006523Root Summer glycyrrhizin low producing strain0.970
DRR006524Root Summer glycyrrhizin low producing strain0.775
DRR006525Leaf Summer glycyrrhizin high producing strain23.461
DRR006526Leaf Summer glycyrrhizin high producing strain24.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.896
SRR2868004Drought Stress(Tissue:root)184.994
SRR2967015Control (Tissue:root)77.198

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave112.636
SRR9715740Leave65.438
SRR9715741Leave248.596
SRR9715739Root2.362
SRR9715742Root16.216
SRR9715743Root13.251

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.951
SRR8749028MeJA induced 9h10.116
SRR8749029MeJA induced 9h37.094
SRR8749030Uninduced94.473
SRR8749031Uninduced570.372
SRR8749032Uninduced264.724

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.270
SRR8400027Control-Root24.266

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved