Gene detail information of Glyur000505s00021223.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G38530.10tryptophan synthase beta type 2
NRKHN15260.10Tryptophan synthase beta chain 2 [Glycine soja]
COGYP_005535112.10tryptophan synthase subunit beta [Amycolatopsis mediterranei S699]
Swissprottr|P25269|TRBP2_ARATH5.00E-26Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|I1LWZ0|I1LWZ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G07130.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00505108052111748+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06001trpB EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0000162  tryptophan biosynthetic process

GO:0006568  tryptophan metabolic process


molecular_function

GO:0004834  tryptophan synthase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000505s00021223.1PF00291.20PALP1214172.10E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.325
SRR1783600control21.921
SRR1783602moderate drought stress11.101
SRR1811619moderate drought stress11.099

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.453
DRR006520Root Summer glycyrrhizin high producing strain4.663
DRR006521Root Winter glycyrrhizin high producing strain5.177
DRR006522Root Winter glycyrrhizin high producing strain5.200
DRR006523Root Summer glycyrrhizin low producing strain2.253
DRR006524Root Summer glycyrrhizin low producing strain2.093
DRR006525Leaf Summer glycyrrhizin high producing strain12.586
DRR006526Leaf Summer glycyrrhizin high producing strain12.725

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.395
SRR2868004Drought Stress(Tissue:root)11.887
SRR2967015Control (Tissue:root)12.164

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave40.050
SRR9715740Leave35.720
SRR9715741Leave54.826
SRR9715739Root12.834
SRR9715742Root23.573
SRR9715743Root20.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.298
SRR8749028MeJA induced 9h27.241
SRR8749029MeJA induced 9h10.447
SRR8749030Uninduced8.141
SRR8749031Uninduced5.119
SRR8749032Uninduced3.293

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.901
SRR8400027Control-Root23.404

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved