Gene detail information of Glyur000505s00021228.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08130.10DNA ligase 1
NRKEH29955.10DNA ligase I, ATP-dependent protein [Medicago truncatula]
COGYP_023450.12.00E-89ATP-dependent DNA ligase [Picrophilus torridus DSM 9790]
Swissprottr|Q42572|DNLI1_ARATH0DNA ligase 1 (Precursor)
trEMBLtr|A0A072UVT2|A0A072UVT2_MEDTR0DNA ligase {ECO:0000256|RuleBase:RU000617}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00505126924132683+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10747LIG1 EC:6.5.1.1 6.5.1.6 6.5.1.7 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0051103  DNA ligation involved in DNA repair

GO:0071897  DNA biosynthetic process


molecular_function

GO:0003677  DNA binding

GO:0003909  DNA ligase activity

GO:0003910  DNA ligase (ATP) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000505s00021228.1PF04675.9DNA_ligase_A_N21201.30E-24
Glyur000505s00021228.1PF01068.16DNA_ligase_A_M2054081.40E-57
Glyur000505s00021228.1PF04679.10DNA_ligase_A_C4335462.10E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.412
SRR1783600control0.473
SRR1783602moderate drought stress0.215
SRR1811619moderate drought stress0.306

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.555
DRR006520Root Summer glycyrrhizin high producing strain0.481
DRR006521Root Winter glycyrrhizin high producing strain1.055
DRR006522Root Winter glycyrrhizin high producing strain1.073
DRR006523Root Summer glycyrrhizin low producing strain0.443
DRR006524Root Summer glycyrrhizin low producing strain0.420
DRR006525Leaf Summer glycyrrhizin high producing strain0.310
DRR006526Leaf Summer glycyrrhizin high producing strain0.271

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.458
SRR2868004Drought Stress(Tissue:root)0.715
SRR2967015Control (Tissue:root)0.854

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.315
SRR9715740Leave0.066
SRR9715741Leave0.074
SRR9715739Root0.000
SRR9715742Root0.117
SRR9715743Root0.061

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.836
SRR8749028MeJA induced 9h1.266
SRR8749029MeJA induced 9h0.801
SRR8749030Uninduced0.043
SRR8749031Uninduced0.000
SRR8749032Uninduced0.033

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.787
SRR8400027Control-Root1.140

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved