Gene detail information of Glyur000505s00021229.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67180.11.00E-89zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
NRKEH25277.10zinc finger, C3HC4 type (RING finger) protein, putative [Medicago truncatula]
Swissprottr|O04251|Y4211_ARATH3.00E-17BRCT domain-containing protein At4g02110
trEMBLtr|A0A072U6H8|A0A072U6H8_MEDTR0Zinc finger, C3HC4 type (RING finger) protein, putative {ECO:0000313|EMBL:KEH25277.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00505134596141272+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000505s00021229.1PF12738.2PTCB-BRCT24863.30E-21
Glyur000505s00021229.1PF00097.20zf-C3HC43343785.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.600
SRR1783600control0.594
SRR1783602moderate drought stress0.540
SRR1811619moderate drought stress0.551

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.971
DRR006520Root Summer glycyrrhizin high producing strain0.960
DRR006521Root Winter glycyrrhizin high producing strain1.523
DRR006522Root Winter glycyrrhizin high producing strain1.549
DRR006523Root Summer glycyrrhizin low producing strain1.018
DRR006524Root Summer glycyrrhizin low producing strain1.017
DRR006525Leaf Summer glycyrrhizin high producing strain0.549
DRR006526Leaf Summer glycyrrhizin high producing strain0.551

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.183
SRR2868004Drought Stress(Tissue:root)1.982
SRR2967015Control (Tissue:root)2.642

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.466
SRR9715740Leave0.000
SRR9715741Leave0.206
SRR9715739Root0.066
SRR9715742Root0.205
SRR9715743Root0.160

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.408
SRR8749028MeJA induced 9h3.613
SRR8749029MeJA induced 9h2.059
SRR8749030Uninduced1.074
SRR8749031Uninduced0.823
SRR8749032Uninduced0.372

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.759
SRR8400027Control-Root2.286

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved