Gene detail information of Glyur000506s00021882.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G18960.10H(+)-ATPase 1
NRKHN22686.10Plasma membrane ATPase 4 [Glycine soja]
COGYP_005270382.10plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030]
Swissprottr|Q03194|PMA4_NICPL0Plasma membrane ATPase 4
trEMBLtr|I1MSP4|I1MSP4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G06930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00506427213343+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01535PMA1, PMA2 EC:3.6.3.6 Oxidative phosphorylation map00190


Gene Ontology

biological_process

GO:0006754  ATP biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0016887  ATPase activity

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000506s00021882.1PF00690.21Cation_ATPase_N32951.20E-14
Glyur000506s00021882.1PF00122.15E1-E2_ATPase1143351.50E-58
Glyur000506s00021882.1PF00702.21Hydrolase3396167.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control51.805
SRR1783600control52.205
SRR1783602moderate drought stress70.885
SRR1811619moderate drought stress70.846

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain82.442
DRR006520Root Summer glycyrrhizin high producing strain81.032
DRR006521Root Winter glycyrrhizin high producing strain168.869
DRR006522Root Winter glycyrrhizin high producing strain166.128
DRR006523Root Summer glycyrrhizin low producing strain78.983
DRR006524Root Summer glycyrrhizin low producing strain79.116
DRR006525Leaf Summer glycyrrhizin high producing strain68.764
DRR006526Leaf Summer glycyrrhizin high producing strain68.293

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)388.740
SRR2868004Drought Stress(Tissue:root)454.039
SRR2967015Control (Tissue:root)467.308

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave195.394
SRR9715740Leave228.889
SRR9715741Leave242.741
SRR9715739Root118.369
SRR9715742Root185.076
SRR9715743Root175.696

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h77.349
SRR8749028MeJA induced 9h170.390
SRR8749029MeJA induced 9h84.732
SRR8749030Uninduced305.422
SRR8749031Uninduced199.865
SRR8749032Uninduced216.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root194.952
SRR8400027Control-Root130.698

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved