Gene detail information of Glyur000506s00021888.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18980.1 | 8.00E-43 | Peroxidase superfamily protein |
| NR | AFK40484.1 | 4.79E-65 | unknown [Lotus japonicus] |
| Swissprot | tr|Q96518|PER16_ARATH | 5.00E-52 | Peroxidase 16 (Precursor) |
| trEMBL | tr|I3SJP2|I3SJP2_LOTJA | 2.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:AFK40484.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00506 | 44756 | 45364 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000506s00021888.1 | PF00141.18 | peroxidase | 66 | 188 | 1.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.268 |
| SRR1783600 | control | 1.256 |
| SRR1783602 | moderate drought stress | 0.227 |
| SRR1811619 | moderate drought stress | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.685 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.850 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.682 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 158.079 |
| SRR2868004 | Drought Stress(Tissue:root) | 84.571 |
| SRR2967015 | Control (Tissue:root) | 83.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.107 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.162 |
| SRR9715743 | Root | 0.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.299 |
| SRR8749028 | MeJA induced 9h | 1.678 |
| SRR8749029 | MeJA induced 9h | 0.581 |
| SRR8749030 | Uninduced | 0.258 |
| SRR8749031 | Uninduced | 0.125 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.527 |
| SRR8400027 | Control-Root | 9.836 |