Gene detail

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Gene detail information of Glyur000506s00021892.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19070.1	1.00E-153	spermidine hydroxycinnamoyl transferase
NR	XP_003550654.1	0	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Glycine max]
Swissprot	tr\|O64470\|SHT_ARATH	0	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|I1MSN6\|I1MSN6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06850.1}

Sequence

Transcript Sequence

>Glyur000506s00021892.1
ATGTCAGTAACATTGAAAGGTTGTTACACAGTGAGGCCCAATGAACCAACATGGTGTGGTCGCTTACCTTTATCTGAATGGGATCAAATAGGAACCATAACTCACGTGCCCACAATCTACTTCTACCGCCCCCACTCAAATGTCGTTTTATCCACCTTGAGAGACTCCTTGAGCAGAGTCCTAGTGCCGTTTTATCCACTAGCCGGTCGTTTACACTGGATAGGCAACGGTCGTTTCGAGCTCGAGTGCAACGCCATGGGCGTTGCGTTCATCGAGGCAGAGTCCTCGTCCACGCTGGACTCTCTCCGTGACTTCTCACCTTCTAATAATAATAATTCGGAGTTGTACCACTCCCTCATCCCGAGCGTGGACTACACTCTCCCAATTGAGGATCTCCCCTTGGTGCTGGTTCAGCTCACGAGGTTCANGTGTGGCGGGGTTAGCATCAGCTTGATAATCTCACACGCGGTTGCGGATGGACCCAGTGCATTGCACTTCGTTTCCGAGTGGGCGAGGCTCGCACGTGGTGAGAGTACTCTCCAAACGGCGCCGTTTCTTGACCGGCACGTGTTCCGTGCCGGAGAACCTCCTCTTCCACGTCATCATGAGGGTGGTGATGAATGTGATCAATGGGATGGGTTCATTCCTCCCCCCCTGTTGCTTGGACATTCGGATNGCACAGNGGAAAGGAATAAGAAAACCACCGTGGCTATTTTGAGAGTGAGCAAAGCGCAAGTTGAGAAACTGAGAAAGACCGCGAATGACAGCTGGCAGAAGCATATGCCAGCTGGCGGCAGTAGTAACGAGCGTGGCTACACGCGGTATGAGACGTTGACGGGACACGTGTGGAGAAGCGCGTGCAAGGCACGGGGGCACGAAGAGGACCAACCAACCGCGCTAGGTGTTTGCGTGGACACGAGGGGTCGCGTGAAGCCCCCGTTGCCGAAAGGGTATTTTGGGAATGCCACGTTGGATGTGGTGGCTACTTCACTCGCGGGCGATTTGGTTTCAAGACCGTTGGGGTATGCTTCGAGTAGGATAAGGGAGGCGATTGAGAAGGTGAACGATGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAGAGGCAGAAGGACTTGAGTGTGTTTCAGGATCTTCATGCGATAGGGAGTGANAAGGGTCCTTTCTATGGGAACCCGAATTTGGGAGTGGTTAGTTGGTTGACGCTTCCGATCTATGGGCTTGATTTTGGGTGGGGGAAGGAGGTTTATATGGGTCCTGGGACACATGATTTCGATGGGGATTCTTTGCTTCTTCCAGGTCCTGATGGTGATGGGTCTCTGTTGGTTGCTATTTGTCTTCAAGAGACCCATATGGATGCGTTTAAGAAGCACTTTTATCAAGACATTAGTACGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00506	69450	70844	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13065	E2.3.1.133, HCT	EC:2.3.1.133	Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000506s00021892.1	PF02458.10	Transferase	1	460	2.00E-116

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.079
SRR1783600	control	0.079
SRR1783602	moderate drought stress	0.108
SRR1811619	moderate drought stress	0.109

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.692
DRR006520	Root Summer glycyrrhizin high producing strain	0.649
DRR006521	Root Winter glycyrrhizin high producing strain	0.160
DRR006522	Root Winter glycyrrhizin high producing strain	0.155
DRR006523	Root Summer glycyrrhizin low producing strain	3.656
DRR006524	Root Summer glycyrrhizin low producing strain	3.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.330

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.333
SRR2868004	Drought Stress(Tissue:root)	0.616
SRR2967015	Control (Tissue:root)	1.112

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.056
SRR9715740	Leave	1.440
SRR9715741	Leave	2.678
SRR9715739	Root	4.102
SRR9715742	Root	2.134
SRR9715743	Root	3.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.740
SRR8749028	MeJA induced 9h	13.382
SRR8749029	MeJA induced 9h	20.641
SRR8749030	Uninduced	12.301
SRR8749031	Uninduced	4.658
SRR8749032	Uninduced	11.283

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.235
SRR8400027	Control-Root	0.565