Gene detail information of Glyur000509s00016401.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78800.1 | 2.00E-163 | UDP-Glycosyltransferase superfamily protein |
| NR | XP_004496759.1 | 0 | PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2-like [Cicer arietinum] |
| COG | YP_003640854.1 | 9.00E-08 | group 1 glycosyl transferase [Thermincola potens JR] |
| trEMBL | tr|C6TI07|C6TI07_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00509 | 43554 | 46962 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03843 | ALG2 | EC:2.4.1.132 2.4.1.257 | N-Glycan biosynthesis | map00510 |
| Various types of N-glycan biosynthesis | map00513 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000509s00016401.2 | PF13579.1 | Glyco_trans_4_4 | 21 | 177 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.451 |
| SRR1783600 | control | 9.446 |
| SRR1783602 | moderate drought stress | 7.760 |
| SRR1811619 | moderate drought stress | 7.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.431 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.132 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.761 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.814 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.722 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.599 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.373 |
| SRR2967015 | Control (Tissue:root) | 13.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.635 |
| SRR9715740 | Leave | 5.431 |
| SRR9715741 | Leave | 6.157 |
| SRR9715739 | Root | 1.542 |
| SRR9715742 | Root | 5.090 |
| SRR9715743 | Root | 6.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.416 |
| SRR8749028 | MeJA induced 9h | 16.520 |
| SRR8749029 | MeJA induced 9h | 11.468 |
| SRR8749030 | Uninduced | 11.514 |
| SRR8749031 | Uninduced | 11.291 |
| SRR8749032 | Uninduced | 8.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.126 |
| SRR8400027 | Control-Root | 12.836 |