Gene detail information of Glyur000509s00016415.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17980.10poly(A) polymerase 1
NRXP_004512881.10PREDICTED: poly(A) polymerase-like [Cicer arietinum]
COGYP_007058509.12.00E-40poly(A) polymerase [Rivularia sp. PCC 7116]
Swissprottr|Q9LMT2|PAPS1_ARATH0Nuclear poly(A) polymerase 1 {ECO:0000303|PubMed:18479511}
trEMBLtr|I1L486|I1L486_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31080.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00509122082129162+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14376PAP EC:2.7.7.19 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0031123  RNA 3'-end processing

GO:0043631  RNA polyadenylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003723  RNA binding

GO:0004652  polynucleotide adenylyltransferase activity

GO:0016779  nucleotidyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000509s00016415.1PF04928.12PAP_central143582.40E-98
Glyur000509s00016415.1PF01909.18NTP_transf_2701506.20E-09
Glyur000509s00016415.1PF04926.10PAP_RNA-bind3594905.00E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.612
SRR1783600control13.614
SRR1783602moderate drought stress18.178
SRR1811619moderate drought stress17.842

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.158
DRR006520Root Summer glycyrrhizin high producing strain19.882
DRR006521Root Winter glycyrrhizin high producing strain21.437
DRR006522Root Winter glycyrrhizin high producing strain20.997
DRR006523Root Summer glycyrrhizin low producing strain17.504
DRR006524Root Summer glycyrrhizin low producing strain16.997
DRR006525Leaf Summer glycyrrhizin high producing strain12.745
DRR006526Leaf Summer glycyrrhizin high producing strain12.128

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.267
SRR2868004Drought Stress(Tissue:root)27.171
SRR2967015Control (Tissue:root)31.885

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.159
SRR9715740Leave23.038
SRR9715741Leave30.837
SRR9715739Root6.707
SRR9715742Root24.133
SRR9715743Root22.042

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.765
SRR8749028MeJA induced 9h24.988
SRR8749029MeJA induced 9h20.558
SRR8749030Uninduced20.603
SRR8749031Uninduced28.048
SRR8749032Uninduced27.760

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.291
SRR8400027Control-Root32.061

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved