Gene detail information of Glyur000510s00021544.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24800.1 | 2.00E-56 | proteolysis 1 |
| NR | XP_006586252.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Glycine max] |
| Swissprot | tr|Q8LBL5|PRT1_ARATH | 1.00E-69 | E3 ubiquitin-protein ligase PRT1 |
| trEMBL | tr|I1KZ98|I1KZ98_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00510 | 17447 | 23056 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000510s00021544.1 | PF13923.1 | zf-C3HC4_2 | 180 | 217 | 2.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.572 |
| SRR1783600 | control | 33.955 |
| SRR1783602 | moderate drought stress | 43.394 |
| SRR1811619 | moderate drought stress | 43.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.744 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 81.253 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 80.244 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.406 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.381 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.605 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.266 |
| SRR2967015 | Control (Tissue:root) | 46.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.849 |
| SRR9715740 | Leave | 14.442 |
| SRR9715741 | Leave | 16.758 |
| SRR9715739 | Root | 6.803 |
| SRR9715742 | Root | 18.120 |
| SRR9715743 | Root | 17.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.163 |
| SRR8749028 | MeJA induced 9h | 38.421 |
| SRR8749029 | MeJA induced 9h | 34.905 |
| SRR8749030 | Uninduced | 19.461 |
| SRR8749031 | Uninduced | 39.768 |
| SRR8749032 | Uninduced | 29.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.209 |
| SRR8400027 | Control-Root | 33.823 |